• 1631 Citations
  • 19 h-Index
19972020

Research output per year

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Research Output

  • 1631 Citations
  • 19 h-Index
  • 74 Article
  • 35 Conference contribution
  • 5 Conference article
  • 1 Paper
2020

A drug-induced liver injury prediction model using transcriptional response data with graph neural network

Hwang, D., Jeon, M. & Kang, J., 2020 Feb 1, Proceedings - 2020 IEEE International Conference on Big Data and Smart Computing, BigComp 2020. Lee, W., Chen, L., Moon, Y-S., Bourgeois, J., Bennis, M., Li, Y-F., Ha, Y-G., Kwon, H-Y. & Cuzzocrea, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 323-329 7 p. 9070697. (Proceedings - 2020 IEEE International Conference on Big Data and Smart Computing, BigComp 2020).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

BioBERT: A pre-trained biomedical language representation model for biomedical text mining

Lee, J., Yoon, W., Kim, S., Kim, D., Kim, S., So, C. H. & Kang, J., 2020 Feb 15, In : Bioinformatics. 36, 4, p. 1234-1240 7 p.

Research output: Contribution to journalArticle

Open Access
23 Citations (Scopus)

Building a PubMed knowledge graph

Xu, J., Kim, S., Song, M., Jeong, M., Kim, D., Kang, J., Rousseau, J. F., Li, X., Xu, W., Torvik, V. I., Bu, Y., Chen, C., Ebeid, I. A., Li, D. & Ding, Y., 2020 Jun 26, In : Scientific data. 7, 1, 205.

Research output: Contribution to journalArticle

Open Access

ChimerDB 4.0: An updated and expanded database of fusion genes

Jang, Y. E., Jang, I., Kim, S., Cho, S., Kim, D., Kim, K., Kim, J., Hwang, J., Kim, S., Kim, J., Kang, J., Lee, B. & Lee, S., 2020 Jan 1, In : Nucleic acids research. 48, D1, p. D817-D824

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Effectively training neural networks for stock index prediction: Predicting the S&P 500 index without using its index data

Lee, J. & Kang, J., 2020 Apr, In : PloS one. 15, 4, e0230635.

Research output: Contribution to journalArticle

Open Access

Pre-trained Language Model for Biomedical Question Answering

Yoon, W., Lee, J., Kim, D., Jeong, M. & Kang, J., 2020 Jan 1, Machine Learning and Knowledge Discovery in Databases - International Workshops of ECML PKDD 2019, Proceedings. Cellier, P. & Driessens, K. (eds.). Springer, p. 727-740 14 p. (Communications in Computer and Information Science; vol. 1168 CCIS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ranking paragraphs foriImproving answer recall in open-domain Question Answering

Lee, J., Yun, S., Kim, H., Ko, M. & Kang, J., 2020 Jan 1, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 565-569 5 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Citations (Scopus)
2019

A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining

Kim, D., Lee, J., So, C. H., Jeon, H., Jeong, M., Choi, Y., Yoon, W., Sung, M. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 73729-73740 12 p., 8730332.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

ARPnet: Antidepressant response prediction network for major depressive disorder

Chang, B., Choi, Y., Jeon, M., Lee, J., Han, K. M., Kim, A., Ham, B. J. & Kang, J., 2019 Nov, In : Genes. 10, 11, 907.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Assessment of network module identification across complex diseases

The DREAM Module Identification Challenge Consortium, 2019 Sep 1, In : Nature Methods. 16, 9, p. 843-852 10 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Can Machines Learn to Comprehend Scientific Literature?

Park, D., Choi, Y., Kim, D., Yu, M., Kim, S. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 16246-16256 11 p., 8606080.

Research output: Contribution to journalArticle

CollaboNet: Collaboration of deep neural networks for biomedical named entity recognition

Yoon, W., So, C. H., Lee, J. & Kang, J., 2019 May 29, In : BMC Bioinformatics. 20, 249.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

AstraZeneca-Sanger Drug Combination DREAM Consortium, 2019 Dec 1, In : Nature communications. 10, 1, 2674.

Research output: Contribution to journalArticle

Open Access
23 Citations (Scopus)

CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancer

Park, S., Hwang, D., Yeo, Y. S., Kim, H. & Kang, J., 2019 Jul 11, In : BMC Medical Genomics. 12, 97.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Global stock market prediction based on stock chart images using deep q-network

Lee, J., Kim, R., Koh, Y. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 167260-167277 18 p., 8901118.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Kitchenette: Predicting and ranking food ingredient pairings using siamese neural networks

Park, D., Kim, K., Park, Y., Shin, J. & Kang, J., 2019 Jan 1, Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019. Kraus, S. (ed.). International Joint Conferences on Artificial Intelligence, p. 5930-5936 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2019-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multipath-DenseNet: A Supervised ensemble architecture of densely connected convolutional networks

Lodhi, B. & Kang, J., 2019 May 1, In : Information Sciences. 482, p. 63-72 10 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

ParaFaceTest: An ensemble of regression tree-based facial features extraction for efficient facial paralysis classification

Barbosa, J., Seo, W. K. & Kang, J., 2019 Apr 25, In : BMC Medical Imaging. 19, 1, 30.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Predicting multiple demographic attributes with task specific embedding transformation and attention network

Kim, R., Kim, H., Lee, J. & Kang, J., 2019 Jan 1, SIAM International Conference on Data Mining, SDM 2019. Society for Industrial and Applied Mathematics Publications, p. 765-773 9 p. (SIAM International Conference on Data Mining, SDM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ReSimNet: Drug response similarity prediction using Siamese neural networks

Jeon, M., Park, D., Lee, J., Jeon, H., Ko, M., Kim, S., Choi, Y., Tan, A-C., Kang, J. & Valencia, A., 2019 Dec 15, In : Bioinformatics. 35, 24, p. 5249-5256 8 p.

Research output: Contribution to journalArticle

Sain: Self-attentive integration network for recommendation

Yun, S., Kim, R., Ko, M. & Kang, J., 2019 Jul 18, SIGIR 2019 - Proceedings of the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery, Inc, p. 1205-1208 4 p. (SIGIR 2019 - Proceedings of the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Self-attention graph pooling

Lee, J., Lee, I. & Kang, J., 2019 Jan 1, 36th International Conference on Machine Learning, ICML 2019. International Machine Learning Society (IMLS), p. 6661-6670 10 p. (36th International Conference on Machine Learning, ICML 2019; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)
2018

A deep neural spoiler detection model using a genre-aware attention mechanism

Chang, B., Kim, H., Kim, R., Kim, D. & Kang, J., 2018 Jan 1, Advances in Knowledge Discovery and Data Mining - 22nd Pacific-Asia Conference, PAKDD 2018, Proceedings. Springer Verlag, p. 183-195 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10937 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

A pilot study of biomedical text comprehension using an attention-based deep neural reader: Design and experimental analysis

Kim, S., Park, D., Choi, Y., Lee, K., Kim, B., Jeon, M., Kim, J., Tan, A-C. & Kang, J., 2018 Jan 1, In : Journal of Medical Internet Research. 20, 1, e2.

Research output: Contribution to journalArticle

4 Citations (Scopus)

BTNET: Boosted tree based gene regulatory network inference algorithm using time-course measurement data

Park, S., Kim, J. M., Shin, W., Han, S. W., Jeon, M., Jang, H. J., Jang, I. S. & Kang, J., 2018 Mar 19, In : BMC Systems Biology. 12, 20.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Chemical-gene relation extraction using recursive neural network

Lim, S. & Kang, J., 2018 Jan 1, In : Database. 2018, 2018

Research output: Contribution to journalArticle

10 Citations (Scopus)

Classification of lung nodules in CT scans using three-dimensional deep convolutional neural networks with a checkpoint ensemble method

Jung, H., Kim, B., Lee, I., Lee, J. & Kang, J., 2018 Dec 3, In : BMC Medical Imaging. 18, 1, 48.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Content-aware hierarchical point-of-interest embedding model for successive POI recommendation

Chang, B., Park, Y., Park, D., Kim, S. & Kang, J., 2018, Proceedings of the 27th International Joint Conference on Artificial Intelligence, IJCAI 2018. Lang, J. (ed.). International Joint Conferences on Artificial Intelligence, p. 3301-3307 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2018-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
27 Citations (Scopus)

Deep learning of mutation-gene-drug relations from the literature

Lee, K., Kim, B., Choi, Y., Kim, S., Shin, W., Lee, S., Park, S., Kim, S., Tan, A-C. & Kang, J., 2018 Jan 25, In : BMC Bioinformatics. 19, 1, 21.

Research output: Contribution to journalArticle

12 Citations (Scopus)

DeepNAP: Deep neural anomaly pre-detection in a semiconductor fab

Kim, C., Lee, J., Kim, R., Park, Y. & Kang, J., 2018 Aug 1, In : Information Sciences. 457-458, p. 1-11 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

DeepPIM: A deep neural point-of-interest imputation model

Chang, B., Park, Y., Kim, S. & Kang, J., 2018 Oct 1, In : Information Sciences. 465, p. 61-71 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Detection of masses in mammograms using a one-stage object detector based on a deep convolutional neural network

Jung, H., Kim, B., Lee, I., Yoo, M., Lee, J., Ham, S., Woo, O. & Kang, J., 2018 Sep, In : PloS one. 13, 9, e0203355.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Drug drug interaction extraction from the literature using a recursive neural network

Lim, S., Lee, K. & Kang, J., 2018 Jan, In : PloS one. 13, 1, e0190926.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Exploring the molecular mechanisms of Traditional Chinese Medicine components using gene expression signatures and connectivity map

Yoo, M., Shin, J., Kim, H., Kim, J., Kang, J. & Tan, A-C., 2018 Jan 1, (Accepted/In press) In : Computer Methods and Programs in Biomedicine.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B

Kim, T. H., Lee, E. J., Choi, J. H., Yim, S. Y., Lee, S., Kang, J., Lee, Y. R., Lee, H. A., Choi, H. S., Kim, E-S., Keum, B., Seo, Y. S., Yim, H. J., Jeen, Y. T., Chun, H-J., Lee, H. S., Kim, C. D., Woo, H. G. & Um, S-H., 2018 Jul 1, In : PLoS One. 13, 7, e0199094.

Research output: Contribution to journalArticle

1 Citation (Scopus)

In silico drug combination discovery for personalized cancer therapy

Jeon, M., Kim, S., Park, S., Lee, H. & Kang, J., 2018 Mar 19, In : BMC Systems Biology. 12, 16.

Research output: Contribution to journalArticle

7 Citations (Scopus)

In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks

Lee, C. J., Kang, D., Lee, S., Lee, S., Kang, J. & Kim, S., 2018 Aug 1, In : Methods. 145, p. 10-15 6 p.

Research output: Contribution to journalArticle

Learning user preferences and understanding calendar contexts for event scheduling

Kim, D., Lee, J., Choi, D., Choi, J. & Kang, J., 2018 Oct 17, CIKM 2018 - Proceedings of the 27th ACM International Conference on Information and Knowledge Management. Paton, N., Candan, S., Wang, H., Allan, J., Agrawal, R., Labrinidis, A., Cuzzocrea, A., Zaki, M., Srivastava, D., Broder, A. & Schuster, A. (eds.). Association for Computing Machinery, p. 337-346 10 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Mut2Vec: Distributed representation of cancerous mutations

Kim, S., Lee, H., Kim, K. & Kang, J., 2018 Apr 20, In : BMC Medical Genomics. 11, 33.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Systems pharmacology-based approach of connecting disease genes in genome-wide association studies with traditional Chinese medicine

Kim, J., Yoo, M., Shin, J., Kim, H., Kang, J. & Tan, A-C., 2018 Jan 1, In : International Journal of Genomics. 2018, 7697356.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2017

ChimerDB 3.0: An enhanced database for fusion genes from cancer transcriptome and literature data mining

Lee, M., Lee, K., Yu, N., Jang, I., Choi, I., Kim, P., EunJang, Y., Kim, B., Kim, S., Lee, B., Kang, J. & Lee, S., 2017 Jan 1, In : Nucleic Acids Research. 45, D1, p. D784-D789

Research output: Contribution to journalArticle

35 Citations (Scopus)

Constructing and evaluating a novel crowdsourcing-based paraphrased opinion spam dataset

Kim, S., Lee, S., Park, D. & Kang, J., 2017 Jan 1, 26th International World Wide Web Conference, WWW 2017. International World Wide Web Conferences Steering Committee, p. 827-836 10 p. 3052607

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Literature-based condition-specific miRNAmRNA target prediction

Oh, M., Rhee, S., Moon, J. H., Chae, H., Lee, S., Kang, J. & Kim, S., 2017 Mar 1, In : PLoS One. 12, 3, e0174999.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Name nationality classification with recurrent neural networks

Lee, J., Kim, H., Ko, M., Choi, D., Choi, J. & Kang, J., 2017, 26th International Joint Conference on Artificial Intelligence, IJCAI 2017. International Joint Conferences on Artificial Intelligence, p. 2081-2087 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Citations (Scopus)
2016

BEST: Next-generation biomedical entity search tool for knowledge discovery from biomedical literature

Lee, S., Kim, D., Lee, K., Choi, J., Kim, S., Jeon, M., Lim, S., Choi, D., Kim, S., Tan, A-C. & Kang, J., 2016 Oct 1, In : PLoS One. 11, 10, e0164680.

Research output: Contribution to journalArticle

28 Citations (Scopus)

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations

Lee, K., Lee, S., Park, S., Kim, S., Kim, S., Choi, K., Tan, A-C. & Kang, J., 2016, In : Database. 2016

Research output: Contribution to journalArticle

17 Citations (Scopus)

CLIP-GENE: A web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

Hur, B., Lim, S., Chae, H., Seo, S., Lee, S., Kang, J. & Kim, S., 2016 Oct 24, In : Biology Direct. 11, 1, 57.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier

Barbosa, J., Lee, K., Lee, S., Lodhi, B., Cho, J-G., Seo, W. K. & Kang, J., 2016 Mar 12, In : BMC Medical Imaging. 16, 1, 23.

Research output: Contribution to journalArticle

11 Citations (Scopus)

HiPub: Translating PubMed and PMC texts to networks for knowledge discovery

Lee, K., Shin, W., Kim, B., Lee, S., Choi, Y., Kim, S., Jeon, M., Tan, A-C. & Kang, J., 2016 Sep 15, In : Bioinformatics. 32, 18, p. 2886-2888 3 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Prioritizing biological pathways by recognizing context in time-series gene expression data

Lee, J., Jo, K., Lee, S., Kang, J. & Kim, S., 2016 Dec 23, In : BMC Bioinformatics. 17, 477.

Research output: Contribution to journalArticle

5 Citations (Scopus)