• 1631 Citations
  • 19 h-Index
19972020

Research output per year

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Research Output

  • 1631 Citations
  • 19 h-Index
  • 74 Article
  • 35 Conference contribution
  • 5 Conference article
  • 1 Paper
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Article
2020

BioBERT: A pre-trained biomedical language representation model for biomedical text mining

Lee, J., Yoon, W., Kim, S., Kim, D., Kim, S., So, C. H. & Kang, J., 2020 Feb 15, In : Bioinformatics. 36, 4, p. 1234-1240 7 p.

Research output: Contribution to journalArticle

Open Access
23 Citations (Scopus)

Building a PubMed knowledge graph

Xu, J., Kim, S., Song, M., Jeong, M., Kim, D., Kang, J., Rousseau, J. F., Li, X., Xu, W., Torvik, V. I., Bu, Y., Chen, C., Ebeid, I. A., Li, D. & Ding, Y., 2020 Jun 26, In : Scientific data. 7, 1, 205.

Research output: Contribution to journalArticle

Open Access

ChimerDB 4.0: An updated and expanded database of fusion genes

Jang, Y. E., Jang, I., Kim, S., Cho, S., Kim, D., Kim, K., Kim, J., Hwang, J., Kim, S., Kim, J., Kang, J., Lee, B. & Lee, S., 2020 Jan 1, In : Nucleic acids research. 48, D1, p. D817-D824

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Effectively training neural networks for stock index prediction: Predicting the S&P 500 index without using its index data

Lee, J. & Kang, J., 2020 Apr, In : PloS one. 15, 4, e0230635.

Research output: Contribution to journalArticle

Open Access
2019

A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining

Kim, D., Lee, J., So, C. H., Jeon, H., Jeong, M., Choi, Y., Yoon, W., Sung, M. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 73729-73740 12 p., 8730332.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

ARPnet: Antidepressant response prediction network for major depressive disorder

Chang, B., Choi, Y., Jeon, M., Lee, J., Han, K. M., Kim, A., Ham, B. J. & Kang, J., 2019 Nov, In : Genes. 10, 11, 907.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Assessment of network module identification across complex diseases

The DREAM Module Identification Challenge Consortium, 2019 Sep 1, In : Nature Methods. 16, 9, p. 843-852 10 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Can Machines Learn to Comprehend Scientific Literature?

Park, D., Choi, Y., Kim, D., Yu, M., Kim, S. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 16246-16256 11 p., 8606080.

Research output: Contribution to journalArticle

CollaboNet: Collaboration of deep neural networks for biomedical named entity recognition

Yoon, W., So, C. H., Lee, J. & Kang, J., 2019 May 29, In : BMC Bioinformatics. 20, 249.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

AstraZeneca-Sanger Drug Combination DREAM Consortium, 2019 Dec 1, In : Nature communications. 10, 1, 2674.

Research output: Contribution to journalArticle

Open Access
23 Citations (Scopus)

CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancer

Park, S., Hwang, D., Yeo, Y. S., Kim, H. & Kang, J., 2019 Jul 11, In : BMC Medical Genomics. 12, 97.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Global stock market prediction based on stock chart images using deep q-network

Lee, J., Kim, R., Koh, Y. & Kang, J., 2019 Jan 1, In : IEEE Access. 7, p. 167260-167277 18 p., 8901118.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Multipath-DenseNet: A Supervised ensemble architecture of densely connected convolutional networks

Lodhi, B. & Kang, J., 2019 May 1, In : Information Sciences. 482, p. 63-72 10 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

ParaFaceTest: An ensemble of regression tree-based facial features extraction for efficient facial paralysis classification

Barbosa, J., Seo, W. K. & Kang, J., 2019 Apr 25, In : BMC Medical Imaging. 19, 1, 30.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

ReSimNet: Drug response similarity prediction using Siamese neural networks

Jeon, M., Park, D., Lee, J., Jeon, H., Ko, M., Kim, S., Choi, Y., Tan, A-C., Kang, J. & Valencia, A., 2019 Dec 15, In : Bioinformatics. 35, 24, p. 5249-5256 8 p.

Research output: Contribution to journalArticle

2018

A pilot study of biomedical text comprehension using an attention-based deep neural reader: Design and experimental analysis

Kim, S., Park, D., Choi, Y., Lee, K., Kim, B., Jeon, M., Kim, J., Tan, A-C. & Kang, J., 2018 Jan 1, In : Journal of Medical Internet Research. 20, 1, e2.

Research output: Contribution to journalArticle

4 Citations (Scopus)

BTNET: Boosted tree based gene regulatory network inference algorithm using time-course measurement data

Park, S., Kim, J. M., Shin, W., Han, S. W., Jeon, M., Jang, H. J., Jang, I. S. & Kang, J., 2018 Mar 19, In : BMC Systems Biology. 12, 20.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Chemical-gene relation extraction using recursive neural network

Lim, S. & Kang, J., 2018 Jan 1, In : Database. 2018, 2018

Research output: Contribution to journalArticle

10 Citations (Scopus)

Classification of lung nodules in CT scans using three-dimensional deep convolutional neural networks with a checkpoint ensemble method

Jung, H., Kim, B., Lee, I., Lee, J. & Kang, J., 2018 Dec 3, In : BMC Medical Imaging. 18, 1, 48.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Deep learning of mutation-gene-drug relations from the literature

Lee, K., Kim, B., Choi, Y., Kim, S., Shin, W., Lee, S., Park, S., Kim, S., Tan, A-C. & Kang, J., 2018 Jan 25, In : BMC Bioinformatics. 19, 1, 21.

Research output: Contribution to journalArticle

12 Citations (Scopus)

DeepNAP: Deep neural anomaly pre-detection in a semiconductor fab

Kim, C., Lee, J., Kim, R., Park, Y. & Kang, J., 2018 Aug 1, In : Information Sciences. 457-458, p. 1-11 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

DeepPIM: A deep neural point-of-interest imputation model

Chang, B., Park, Y., Kim, S. & Kang, J., 2018 Oct 1, In : Information Sciences. 465, p. 61-71 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Detection of masses in mammograms using a one-stage object detector based on a deep convolutional neural network

Jung, H., Kim, B., Lee, I., Yoo, M., Lee, J., Ham, S., Woo, O. & Kang, J., 2018 Sep, In : PloS one. 13, 9, e0203355.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Drug drug interaction extraction from the literature using a recursive neural network

Lim, S., Lee, K. & Kang, J., 2018 Jan, In : PloS one. 13, 1, e0190926.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Exploring the molecular mechanisms of Traditional Chinese Medicine components using gene expression signatures and connectivity map

Yoo, M., Shin, J., Kim, H., Kim, J., Kang, J. & Tan, A-C., 2018 Jan 1, (Accepted/In press) In : Computer Methods and Programs in Biomedicine.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B

Kim, T. H., Lee, E. J., Choi, J. H., Yim, S. Y., Lee, S., Kang, J., Lee, Y. R., Lee, H. A., Choi, H. S., Kim, E-S., Keum, B., Seo, Y. S., Yim, H. J., Jeen, Y. T., Chun, H-J., Lee, H. S., Kim, C. D., Woo, H. G. & Um, S-H., 2018 Jul 1, In : PLoS One. 13, 7, e0199094.

Research output: Contribution to journalArticle

1 Citation (Scopus)

In silico drug combination discovery for personalized cancer therapy

Jeon, M., Kim, S., Park, S., Lee, H. & Kang, J., 2018 Mar 19, In : BMC Systems Biology. 12, 16.

Research output: Contribution to journalArticle

7 Citations (Scopus)

In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks

Lee, C. J., Kang, D., Lee, S., Lee, S., Kang, J. & Kim, S., 2018 Aug 1, In : Methods. 145, p. 10-15 6 p.

Research output: Contribution to journalArticle

Mut2Vec: Distributed representation of cancerous mutations

Kim, S., Lee, H., Kim, K. & Kang, J., 2018 Apr 20, In : BMC Medical Genomics. 11, 33.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Systems pharmacology-based approach of connecting disease genes in genome-wide association studies with traditional Chinese medicine

Kim, J., Yoo, M., Shin, J., Kim, H., Kang, J. & Tan, A-C., 2018 Jan 1, In : International Journal of Genomics. 2018, 7697356.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2017

ChimerDB 3.0: An enhanced database for fusion genes from cancer transcriptome and literature data mining

Lee, M., Lee, K., Yu, N., Jang, I., Choi, I., Kim, P., EunJang, Y., Kim, B., Kim, S., Lee, B., Kang, J. & Lee, S., 2017 Jan 1, In : Nucleic Acids Research. 45, D1, p. D784-D789

Research output: Contribution to journalArticle

35 Citations (Scopus)

Literature-based condition-specific miRNAmRNA target prediction

Oh, M., Rhee, S., Moon, J. H., Chae, H., Lee, S., Kang, J. & Kim, S., 2017 Mar 1, In : PLoS One. 12, 3, e0174999.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2016

BEST: Next-generation biomedical entity search tool for knowledge discovery from biomedical literature

Lee, S., Kim, D., Lee, K., Choi, J., Kim, S., Jeon, M., Lim, S., Choi, D., Kim, S., Tan, A-C. & Kang, J., 2016 Oct 1, In : PLoS One. 11, 10, e0164680.

Research output: Contribution to journalArticle

28 Citations (Scopus)

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations

Lee, K., Lee, S., Park, S., Kim, S., Kim, S., Choi, K., Tan, A-C. & Kang, J., 2016, In : Database. 2016

Research output: Contribution to journalArticle

17 Citations (Scopus)

CLIP-GENE: A web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

Hur, B., Lim, S., Chae, H., Seo, S., Lee, S., Kang, J. & Kim, S., 2016 Oct 24, In : Biology Direct. 11, 1, 57.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier

Barbosa, J., Lee, K., Lee, S., Lodhi, B., Cho, J-G., Seo, W. K. & Kang, J., 2016 Mar 12, In : BMC Medical Imaging. 16, 1, 23.

Research output: Contribution to journalArticle

11 Citations (Scopus)

HiPub: Translating PubMed and PMC texts to networks for knowledge discovery

Lee, K., Shin, W., Kim, B., Lee, S., Choi, Y., Kim, S., Jeon, M., Tan, A-C. & Kang, J., 2016 Sep 15, In : Bioinformatics. 32, 18, p. 2886-2888 3 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Prioritizing biological pathways by recognizing context in time-series gene expression data

Lee, J., Jo, K., Lee, S., Kang, J. & Kim, S., 2016 Dec 23, In : BMC Bioinformatics. 17, 477.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2015

A bibliometric method for measuring the degree of technological innovation

Yeo, W., Kim, S., Park, H. & Kang, J., 2015 Jun 1, In : Technological Forecasting and Social Change. 95, p. 152-162 11 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

An integrated bioinformatics analysis to dissect kinase dependency in triple negative breast cancer

Ryall, K. A., Kim, J., Klauck, P. J., Shin, J., Yoo, M., Ionkina, A., Pitts, T. M., Tentler, J. J., Diamond, J. R., Eckhardt, S. G., Heasley, L. E., Kang, J. & Tan, A-C., 2015 Dec 9, In : BMC Genomics. 16, 12, S2.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Feasibility of using a mobile application for the monitoring and management of stroke-associated risk factors

Seo, W. K., Kang, J., Jeon, M., Lee, K., Lee, S., Kim, J. H., Oh, K. & Koh, S. B., 2015, In : Journal of Clinical Neurology (Korea). 11, 2, p. 142-148 7 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

ICOSSY: An online tool for context-specific subnetwork discovery from gene expression data

Saha, A., Jeon, M., Tan, A-C. & Kang, J., 2015 Jul 6, In : PLoS One. 10, 7, e0131656.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Identifying kinase dependency in cancer cells by integrating high-throughput drug screening and kinase inhibition data

Ryall, K. A., Shin, J., Yoo, M., Hinz, T. K., Kim, J., Kang, J., Heasley, L. E. & Tan, A-C., 2015 Jun 18, In : Bioinformatics. 31, 23, p. 3799-3806 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2014

Aggregative and stochastic model of main path identification: A case study on graphene

Yeo, W., Kim, S., Lee, J. M. & Kang, J., 2014 Jan, In : Scientometrics. 98, 1, p. 633-655 23 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Automatic context-specific subnetwork discovery from large interaction networks

Saha, A., Tan, A. C. & Kang, J., 2014 Jan 1, In : PloS one. 9, 1, e84227.

Research output: Contribution to journalArticle

9 Citations (Scopus)

BEReX: Biomedical entity-relationship explorer

Jeon, M., Lee, S., Lee, K., Tan, A. C. & Kang, J., 2014 Jan 1, In : Bioinformatics. 30, 1, p. 135-136 2 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy

Kim, J., Vasu, V. T., Mishra, R., Singleton, K. R., Yoo, M., Leach, S. M., Farias-Hesson, E., Mason, R. J., Kang, J., Ramamoorthy, P., Kern, J. A., Heasley, L. E., Finigan, J. H. & Tan, A-C., 2014 Sep 1, In : Bioinformatics. 30, 17, p. 2393-2398 6 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Development of Test Toolkit of Hard Review to Evaluate a Random Clinical Decision Support System for the Management of Chronic Adult Diseases

Ahn, J. T., Park, G-H., Son, J., Lim, C. S., Kang, J., Cha, J., Park, K. & Kim, D. M., 2014 May 24, (Accepted/In press) In : Wireless Personal Communications.

Research output: Contribution to journalArticle

2 Citations (Scopus)

DSigDB: Drug signatures database for gene set analysis

Yoo, M., Shin, J., Kim, J., Ryall, K. A., Lee, K., Lee, S., Jeon, M., Kang, J. & Tan, A-C., 2014 Jul 31, In : Bioinformatics. 31, 18, p. 3069-3071 3 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)
2013

A quantitative approach to recommend promising technologies for SME innovation: A case study on knowledge arbitrage from LCD to solar cell

Yeo, W., Kim, S., Coh, B. Y. & Kang, J., 2013 Aug, In : Scientometrics. 96, 2, p. 589-604 16 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)