• 3376 Citations
  • 32 h-Index
19982020

Research output per year

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Research Output

  • 3376 Citations
  • 32 h-Index
  • 70 Article
  • 2 Review article
  • 1 Editorial
  • 1 Short survey
2020

Molecular Mechanisms Driving mRNA Degradation by m6A Modification

Lee, Y., Choe, J., Park, O. H. & Kim, Y. K., 2020 Mar, In : Trends in Genetics. 36, 3, p. 177-188 12 p.

Research output: Contribution to journalReview article

Open Access

The position of the target site for engineered nucleases improves the aberrant mRNA clearance in in vivo genome editing

Lee, J. H., Yu, S., Nam, T. W., Roh, J. I., Jin, Y., Han, J. P., Cha, J. Y., Kim, Y. K., Yeom, S. C., Nam, K. T. & Lee, H. W., 2020 Dec 1, In : Scientific reports. 10, 1, 4173.

Research output: Contribution to journalArticle

Open Access
2019

DLK regulates a distinctive transcriptional regeneration program after peripheral nerve injury

Shin, J. E., Ha, H., Kim, Y. K., Cho, Y. & DiAntonio, A., 2019 Jul 1, In : Neurobiology of Disease. 127, p. 178-192 15 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

eIF4A3 Phosphorylation by CDKs Affects NMD during the Cell Cycle

Ryu, I., Won, Y. S., Ha, H., Kim, E., Park, Y., Kim, M. K., Kwon, D. H., Choe, J., Song, H. K., Jung, H. & Kim, Y. K., 2019 Feb 19, In : Cell Reports. 26, 8, p. 2126-2139.e9

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Endoribonucleolytic Cleavage of m 6 A-Containing RNAs by RNase P/MRP Complex

Park, O. H., Ha, H., Lee, Y., Boo, S. H., Kwon, D. H., Song, H. K. & Kim, Y. K., 2019 May 2, In : Molecular Cell. 74, 3, p. 494-507.e8

Research output: Contribution to journalArticle

21 Citations (Scopus)

HuR stabilizes a polyadenylated form of replication-dependent histone mRNAs under stress conditions

Ryu, I., Park, Y., Seo, J. W., Park, O. H., Ha, H., Nam, J. W. & Kim, Y. K., 2019 Feb 1, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33, 2, p. 2680-2693 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Staufen1 and UPF1 exert opposite actions on the replacement of the nuclear cap-binding complex by eIF4E at the 5' end of mRNAs

Jeong, K., Ryu, I., Park, J., Hwang, H. J., Ha, H., Park, Y., Oh, S. T. & Kim, Y. K., 2019 Sep 26, In : Nucleic acids research. 47, 17, p. 9313-9328 16 p.

Research output: Contribution to journalArticle

Open Access

UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond

Kim, Y. K. & Maquat, L. E., 2019 Apr 1, In : RNA. 25, 4, p. 407-422 16 p.

Research output: Contribution to journalReview article

Open Access
22 Citations (Scopus)
2018

Comparative analysis of the transcriptome of injured nerve segments reveals spatiotemporal responses to neural damage in mice

Shin, J. E., Ha, H., Cho, E. H., Kim, Y. K. & Cho, Y., 2018 May 1, In : Journal of Comparative Neurology. 526, 7, p. 1195-1208 14 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter

Kwon, D. H., Park, O. H., Kim, L., Jung, Y. O., Park, Y., Jeong, H., Hyun, J., Kim, Y. K. & Song, H. K., 2018 Dec 1, In : Nature Communications. 9, 1, 3291.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2017

Crosstalk between translation and the aggresome–autophagy pathway

Park, Y., Park, J. & Kim, Y. K., 2017 Nov 1, (Accepted/In press) In : Autophagy. p. 1-3 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Misfolded polypeptides are selectively recognized and transported toward aggresomes by a CED complex

Park, J., Park, Y., Ryu, I., Choi, M. H., Lee, H. J., Oh, N., Kim, K., Kim, K. M., Choe, J., Lee, C., Baik, J-H. & Kim, Y. K., 2017 Jun 7, In : Nature Communications. 8, 15730.

Research output: Contribution to journalArticle

11 Citations (Scopus)

RNA at the heart of gene expression: Special issue of BMB Reports 2017

Kim, Y. K., 2017, In : BMB Reports. 50, 4, p. 157 1 p.

Research output: Contribution to journalEditorial

RNA surveillance via nonsense-mediated mRNA decay is crucial for longevity in daf-2/insulin/IGF-1 mutant C. Elegans

Son, H. G., Seo, M., Ham, S., Hwang, W., Lee, D., An, S. W. A., Artan, M., Seo, K., Kaletsky, R., Arey, R. N., Ryu, Y., Ha, C. M., Kim, Y. K., Murphy, C. T., Roh, T. Y., Nam, H. G. & Lee, S. J. V., 2017 Mar 9, In : Nature Communications. 8, 14749.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Translation initiation mediated by nuclear cap-binding protein complex

Ryu, I. & Kim, Y. K., 2017, In : BMB Reports. 50, 4, p. 186-193 8 p.

Research output: Contribution to journalShort survey

5 Citations (Scopus)
2016

Identification and molecular characterization of cellular factors required for glucocorticoid receptor-mediated mRNA decay

Park, O. H., Park, J., Yu, M., An, H. T., Ko, J. S. & Kim, Y. K., 2016 Sep 15, In : Genes and Development. 30, 18, p. 2093-2105 13 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2015

A new function of glucocorticoid receptor: regulation of mRNA stability

Park, O. H., Do, E. & Kim, Y. K., 2015, In : BMB Reports. 48, 7, p. 367-368 2 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Glucocorticoid receptor interacts with PNRC2 in a ligand-dependent manner to recruit UPF1 for rapid mRNA degradation

Cho, H., Park, O. H., Park, J., Ryu, I., Kim, J., Ko, J. S. & Kim, Y. K., 2015 Mar 31, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 13, p. E1540-E1549

Research output: Contribution to journalArticle

25 Citations (Scopus)

Insights into autophagosome maturation revealed by the structures of ATG5 with its interacting partners

Kim, J. H., Hong, S. B., Lee, J. K., Han, S., Roh, K. H., Lee, K. E., Kim, Y. K., Choi, E. J. & Song, H. K., 2015 Jan 1, In : Autophagy. 11, 1, p. 75-87 13 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)
2014

A multifunctional protein EWS regulates the expression of Drosha and microRNAs

Kim, K. Y., Hwang, Y. J., Jung, M. K., Choe, J., Kim, Y., Kim, S., Lee, C. J., Ahn, H., Lee, J., Kowall, N. W., Kim, Y. K., Kim, J. I., Lee, S. B. & Ryu, H., 2014 Jan 1, In : Cell Death and Differentiation. 21, 1, p. 136-145 10 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

eIF4AIII enhances translation of nuclear cap-binding complex-bound mRNAs by promoting disruption of secondary structures in 5'UTR

Choe, J., Ryu, I., Park, O. H. Y., Park, J., Cho, H., Yoo, J. S. E., Chi, S. W. O., Kim, M. K. Y., Song, H. K. Y. & Kim, Y. K. I., 2014 Oct 28, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. E4577-E4586

Research output: Contribution to journalArticle

EIF4AIII enhances translation of nuclear cap-binding complex-bound mRNAs by promoting disruption of secondary structures in UTR

Choe, J., Ryu, I., Park, O. H., Park, J., Cho, H., Yoo, J. S., Chi, S. W., Kim, M. K., Song, H. K. & Kim, Y. K., 2014 Oct 28, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. E4577-E4586

Research output: Contribution to journalArticle

31 Citations (Scopus)

Quantitative proteome analysis of age-related changes in mouse gastrocnemius muscle using mTRAQ

Hwang, C. Y., Kim, K., Choi, J. Y., Bahn, Y. J., Lee, S. M., Kim, Y. K., Lee, C. & Kwon, K. S., 2014 Jan 1, In : Proteomics. 14, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

The mRNP remodeling mediated by UPF1 promotes rapid degradation of replication-dependent histone mRNA

Choe, J., Ahn, S. H. & Kim, Y. K., 2014 Jan 1, In : Nucleic Acids Research. 42, 14, p. 9334-9349 16 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

The role of sLZIP in cyclin D3-mediated negative regulation of androgen receptor transactivation and its involvement in prostate cancer

Kim, Y., Kim, J., Jang, S. W. & Ko, J., 2014 Jan 20, (Accepted/In press) In : Oncogene.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2013

MG53-induced IRS-1 ubiquitination negatively regulates skeletal myogenesis and insulin signalling

Yi, J. S., Park, J. S., Ham, Y. M., Nguyen, N., Lee, N. R., Hong, J., Kim, B. W., Lee, H., Lee, C. S., Jeong, B. C., Song, H. K., Cho, H., Kim, Y. K., Lee, J. S., Park, K. S., Shin, H., Choi, I., Lee, S. H., Park, W. J., Park, S. Y. & 8 others, Choi, C. S., Lin, P., Karunasiri, M., Tan, T., Duann, P., Zhu, H., Ma, J. & Ko, Y-G., 2013 Sep 3, In : Nature Communications. 4, 2354.

Research output: Contribution to journalArticle

77 Citations (Scopus)

Non-structural protein 1 of influenza viruses inhibits rapid mRNA degradation mediated by double-stranded RNA-binding protein, staufen1

Cho, H., Ahn, S. H., Kim, K. M. & Kim, Y. K., 2013 Jul 11, In : FEBS Letters. 587, 14, p. 2118-2124 7 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Rapid degradation of replication-dependent histone mRNAs largely occurs on mRNAs bound by nuclear cap-binding proteins 80 and 20

Choe, J., Kim, K. M., Park, S., Lee, Y. K., Song, O. K., Kim, M. K., Lee, B. G., Song, H. K. & Kim, Y. K., 2013 Jan 1, In : Nucleic Acids Research. 41, 2, p. 1307-1318 12 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Reinvestigation of aminoacyl-TRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex

Kim, K., Park, S. J., Na, S., Kim, J. S., Choi, H., Kim, Y. K., Paek, E. & Lee, C., 2013 Dec 2, In : PLoS One. 8, 12, e81734.

Research output: Contribution to journalArticle

8 Citations (Scopus)

SMG1 regulates adipogenesis via targeting of staufen1-mediated mRNA decay

Cho, H., Han, S., Park, O. H. & Kim, Y. K., 2013 Dec 1, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1829, 12, p. 1276-1287 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay

Cho, H., Han, S., Choe, J., Park, S. G., Choi, S. S. & Kim, Y. K., 2013 Jan 1, In : Nucleic Acids Research. 41, 2, p. 1319-1328 10 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

When a ribosome encounters a premature termination codon

Hwang, J. & Kim, Y. K., 2013 Jan 1, In : BMB Reports. 46, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2012

LIN28A is a suppressor of ER-associated translation in embryonic stem cells

Cho, J., Chang, H., Kwon, S. C., Kim, B., Kim, Y., Choe, J., Ha, M., Kim, Y. K. & Kim, V. N., 2012 Nov 9, In : Cell. 151, 4, p. 765-777 13 p.

Research output: Contribution to journalArticle

137 Citations (Scopus)

Staufen1-Mediated mRNA Decay Functions in Adipogenesis

Cho, H., Kim, K. M., Han, S., Choe, J., Park, S. G., Choi, S. S. & Kim, Y. K., 2012 May 25, In : Molecular Cell. 46, 4, p. 495-506 12 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Structural basis of the PNRC2-mediated link between mRNA surveillance and decapping

Lai, T., Cho, H., Liu, Z., Bowler, M. W., Piao, S., Parker, R., Kim, Y. K. & Song, H., 2012 Dec 5, In : Structure. 20, 12, p. 2025-2037 13 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)
7 Citations (Scopus)
29 Citations (Scopus)
2011
18 Citations (Scopus)

Cell-surface receptor for complement component C1q (gC1qR) is a key regulator for lamellipodia formation and cancer metastasis

Kim, K. B., Yi, J. S., Nguyen, N., Lee, J. H., Kwon, Y. C., Ahn, B. Y., Cho, H., Kim, Y. K., Yoo, H. J., Lee, J. S. & Ko, Y. G., 2011 Jul 1, In : Journal of Biological Chemistry. 286, 26, p. 23093-23101 9 p.

Research output: Contribution to journalArticle

39 Citations (Scopus)

Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense

Jeong, H. J., Kim, Y. J., Kim, S. H., Kim, Y. H., Lee, I. J., Kim, Y. K. & Shin, J. S., 2011 Dec 1, In : Plant and Cell Physiology. 52, 12, p. 2147-2156 10 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Opposite functions of HIF-α isoforms in VEGF induction by TGF-Β1 under non-hypoxic conditions

Chae, K. S., Kang, M. J., Lee, J. H., Ryu, B. K., Lee, M. G., Her, N. G., Ha, T. K., Han, J., Kim, Y. K. & Chi, S-G., 2011 Mar 10, In : Oncogene. 30, 10, p. 1213-1228 16 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)
2010

MicroRNA/Argonaute 2 regulates nonsense-mediated messenger RNA decay

Choe, J., Cho, H., Lee, H. C. & Kim, Y. K., 2010 May 1, In : EMBO Reports. 11, 5, p. 380-386 7 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

Nonsense-mediated translational repression involves exon junction complex downstream of premature translation termination codon

Lee, H. C., Oh, N., Cho, H., Choe, J. & Kim, Y. K., 2010 Feb 1, In : FEBS Letters. 584, 4, p. 795-800 6 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2009

A new MIF4G domain-containing protein, CTIF, directs nuclear cap-binding protein CBP80/20-dependent translation

Kyoung, M. K., Cho, H., Choi, K., Kim, J., Kim, B. W., Ko, Y-G., Sung, K. J. & Kim, Y. K., 2009 Sep 1, In : Genes and Development. 23, 17, p. 2033-2045 13 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Exon junction complex enhances translation of spliced mRNAs at multiple steps

Lee, H. C., Choe, J., Chi, S-G. & Kim, Y. K., 2009 Jul 3, In : Biochemical and Biophysical Research Communications. 384, 3, p. 334-340 7 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Human Proline-Rich Nuclear Receptor Coregulatory Protein 2 Mediates an Interaction between mRNA Surveillance Machinery and Decapping Complex

Cho, H., Kim, K. M. & Kim, Y. K., 2009 Jan 16, In : Molecular Cell. 33, 1, p. 75-86 12 p.

Research output: Contribution to journalArticle

110 Citations (Scopus)

PKR protein kinase is activated by hepatitis C virus and inhibits viral replication through translational control

Kang, J. I., Kwon, S. N., Park, S. H., Kim, Y. K., Choi, S-Y., Kim, J. P. & Ahn, B-Y., 2009 Jun 1, In : Virus Research. 142, 1-2, p. 51-56 6 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)

SMD and NMD are competitive pathways that contribute to myogenesis: Effects on PAX3 and myogenin mRNAs

Gong, C., Kim, Y. K., Woeller, C. F., Tang, Y. & Maquat, L. E., 2009 Jan 1, In : Genes and Development. 23, 1, p. 54-66 13 p.

Research output: Contribution to journalArticle

111 Citations (Scopus)