A Bayesian approach for the alignment of high-resolution NMR spectra

Seoung Bum Kim, Zhou Wang, Basavaraj Hiremath

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Metabolic analysis with high-resolution nuclear magnetic resonance (NMR) enables simultaneous investigation of numerous chemical species in response to biochemical changes in subjects. When the analysis involves comparing two or more NMR spectra, it is essential to properly align them because small variations across different spectra influence the alignment and thus, interfere with direct comparisons between samples. We propose a new alignment method within the Bayesian modeling framework. The proposed method allows us to estimate the amplitude and phase shifts simultaneously and to obtain robust results in the existence of noise. Effectiveness of our proposed method is demonstrated through real NMR spectra in human plasma and a comparison study with dynamic time warping and correlated optimized warping, two widely used alignment methods in spectral data.

Original languageEnglish
Pages (from-to)19-32
Number of pages14
JournalAnnals of Operations Research
Volume174
Issue number1
DOIs
Publication statusPublished - 2010 Feb 1
Externally publishedYes

Fingerprint

Alignment
Bayesian approach
Warping
Plasma
Bayesian modeling

Keywords

  • Alignment
  • Amplitude (baseline intensity) variation
  • Bayesian method
  • Nuclear magnetic resonance (NMR)
  • Phase (spectral) shift

ASJC Scopus subject areas

  • Management Science and Operations Research
  • Decision Sciences(all)

Cite this

A Bayesian approach for the alignment of high-resolution NMR spectra. / Kim, Seoung Bum; Wang, Zhou; Hiremath, Basavaraj.

In: Annals of Operations Research, Vol. 174, No. 1, 01.02.2010, p. 19-32.

Research output: Contribution to journalArticle

Kim, Seoung Bum ; Wang, Zhou ; Hiremath, Basavaraj. / A Bayesian approach for the alignment of high-resolution NMR spectra. In: Annals of Operations Research. 2010 ; Vol. 174, No. 1. pp. 19-32.
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