A genotype-independent real-time PCR assay for quantification of hepatitis B virus DNA

Ying Liu, Munira Hussain, Stephen Wong, Scott K. Fung, Hyung Joon Yim, Anna S F Lok

Research output: Contribution to journalArticle

37 Citations (Scopus)

Abstract

Accurate quantification of hepatitis B virus (HBV) DNA levels is important for monitoring patients with chronic HBV infection and for assessing their responses to antiviral therapy. This study aimed to develop a real-time PCR assay that is sensitive and can accurately quantify a wide range of HBV DNA levels across the known HBV genotypes. An "in-house" real-time PCR assay using primers and a TaqMan probe in a highly conserved region of the HBV surface gene was designed. The assay was standardized against a WHO standard and validated against plasmids of HBV genotypes A through H. The linear quantification range was approximately 5 × 100 to 2.0 × 109 IU/ml. Results of samples from patients infected with HBV genotypes A through H tested using our real-time "in-house" PCR assay showed an excellent correlation with those of the Cobas Amplicor HBV Monitor (R2 = 0.9435) and the Cobas TaqMan HBV (R2 = 0.9873) tests. We have established a real-time PCR assay that is genotype independent and can accurately quantify a wide range of HBV DNA levels. Further studies of additional samples are ongoing to validate the genotype independence of our assay.

Original languageEnglish
Pages (from-to)553-558
Number of pages6
JournalJournal of Clinical Microbiology
Volume45
Issue number2
DOIs
Publication statusPublished - 2007 Feb 1
Externally publishedYes

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Hepatitis B virus
Real-Time Polymerase Chain Reaction
Genotype
DNA
Chronic Hepatitis B
Physiologic Monitoring
Virus Diseases
Antiviral Agents
Plasmids
Polymerase Chain Reaction

ASJC Scopus subject areas

  • Microbiology (medical)

Cite this

A genotype-independent real-time PCR assay for quantification of hepatitis B virus DNA. / Liu, Ying; Hussain, Munira; Wong, Stephen; Fung, Scott K.; Yim, Hyung Joon; Lok, Anna S F.

In: Journal of Clinical Microbiology, Vol. 45, No. 2, 01.02.2007, p. 553-558.

Research output: Contribution to journalArticle

Liu, Ying ; Hussain, Munira ; Wong, Stephen ; Fung, Scott K. ; Yim, Hyung Joon ; Lok, Anna S F. / A genotype-independent real-time PCR assay for quantification of hepatitis B virus DNA. In: Journal of Clinical Microbiology. 2007 ; Vol. 45, No. 2. pp. 553-558.
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