Artificial neural network models for prediction of intestinal permeability of oligopeptides

Eunkyoung Jung, Junhyoung Kim, Minkyoung Kim, Dong Hyun Jung, Hokyoung Rhee, Jae Min Shin, Kihang Choi, Sang Kee Kang, Min Kook Kim, Cheol Heui Yun, Yun Jaie Choi, Seung Hoon Choi

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

Background: Oral delivery is a highly desirable property for candidate drugs under development. Computational modeling could provide a quick and inexpensive way to assess the intestinal permeability of a molecule. Although there have been several studies aimed at predicting the intestinal absorption of chemical compounds, there have been no attempts to predict intestinal permeability on the basis of peptide sequence information. To develop models for predicting the intestinal permeability of peptides, we adopted an artificial neural network as a machine-learning algorithm. The positive control data consisted of intestinal barrier-permeable peptides obtained by the peroral phage display technique, and the negative control data were prepared from random sequences. Results: The capacity of our models to make appropriate predictions was validated by statistical indicators including sensitivity, specificity, enrichment curve, and the area under the receiver operating characteristic (ROC) curve (the ROC score). The training and test set statistics indicated that our models were of strikingly good quality and could discriminate between permeable and random sequences with a high level of confidence. Conclusion: We developed artificial neural network models to predict the intestinal permeabilities of oligopeptides on the basis of peptide sequence information. Both binary and VHSE (principal components score Vectors of Hydrophobic, Steric and Electronic properties) descriptors produced statistically significant training models; the models with simple neural network architectures showed slightly greater predictive power than those with complex ones. We anticipate that our models will be applicable to the selection of intestinal barrier-permeable peptides for generating peptide drugs or peptidomimetics.

Original languageEnglish
Article number245
JournalBMC Bioinformatics
Volume8
DOIs
Publication statusPublished - 2007 Jul 11

ASJC Scopus subject areas

  • Structural Biology
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Applied Mathematics

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    Jung, E., Kim, J., Kim, M., Jung, D. H., Rhee, H., Shin, J. M., Choi, K., Kang, S. K., Kim, M. K., Yun, C. H., Choi, Y. J., & Choi, S. H. (2007). Artificial neural network models for prediction of intestinal permeability of oligopeptides. BMC Bioinformatics, 8, [245]. https://doi.org/10.1186/1471-2105-8-245