Characterization of DNA immobilization and subsequent hybridization using in situ quartz crystal microbalance, fluorescence spectroscopy, and surface plasmon resonance

Yoon Kyoung Cho, Sunhee Kim, Young A. Kim, Hee Kyun Lim, Kyusang Lee, Dae Sung Yoon, Geunbae Lim, Y. Eugene Pak, Tai Hwan Ha, Kwan Kim

Research output: Contribution to journalArticle

48 Citations (Scopus)

Abstract

We have characterized the immobilization of thiol-modified oligomers on Au surfaces and subsequent hybridization with a perfectly matched or single-base mismatched target using a quartz crystal microbalance (QCM) and fluorescence spectroscopy. The surface density of immobilized probe molecules and the hybridization efficiency depending on the type of buffer and salt concentration were investigated. We observed some ambiguities in surface coverage deduced from QCM measurement and adopted a complementary fluorescence displacement method. Direct comparison of surface coverage deduced from frequency change in QCM measurement and determined by the fluorescence exchange reaction revealed that QCM results are highly overestimated and the amount of overestimation strongly depends on the type of buffer and the structure of the film. Discrimination capability of the surface attached 15-mer probe was also examined using a single-base mismatched target at various hybridization temperatures. Hybridization efficiency depending on the type of single base mismatch was investigated using surface plasmon resonance (SPR).

Original languageEnglish
Pages (from-to)44-52
Number of pages9
JournalJournal of Colloid and Interface Science
Volume278
Issue number1
DOIs
Publication statusPublished - 2004 Oct 1
Externally publishedYes

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Quartz crystal microbalances
Fluorescence spectroscopy
Surface plasmon resonance
DNA
Buffers
Fluorescence
Oligomers
Sulfhydryl Compounds
Salts
Molecules
Temperature

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Biomaterials
  • Surfaces, Coatings and Films
  • Colloid and Surface Chemistry

Cite this

Characterization of DNA immobilization and subsequent hybridization using in situ quartz crystal microbalance, fluorescence spectroscopy, and surface plasmon resonance. / Cho, Yoon Kyoung; Kim, Sunhee; Kim, Young A.; Lim, Hee Kyun; Lee, Kyusang; Yoon, Dae Sung; Lim, Geunbae; Pak, Y. Eugene; Ha, Tai Hwan; Kim, Kwan.

In: Journal of Colloid and Interface Science, Vol. 278, No. 1, 01.10.2004, p. 44-52.

Research output: Contribution to journalArticle

Cho, Yoon Kyoung ; Kim, Sunhee ; Kim, Young A. ; Lim, Hee Kyun ; Lee, Kyusang ; Yoon, Dae Sung ; Lim, Geunbae ; Pak, Y. Eugene ; Ha, Tai Hwan ; Kim, Kwan. / Characterization of DNA immobilization and subsequent hybridization using in situ quartz crystal microbalance, fluorescence spectroscopy, and surface plasmon resonance. In: Journal of Colloid and Interface Science. 2004 ; Vol. 278, No. 1. pp. 44-52.
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AU - Yoon, Dae Sung

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