Characterization of Ty3-gypsy-like elements in Hibiscus syriacus

Ji Ung Jeung, Sung Ki Cho, Seung Jae Lee, Jeong Sheop Shin

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Southern blot analysis revealed a ubiquitous distribution and high copy number of Ty3-gypsy-like elements in the genome of Hibiscus syriacus. Comparative phylogenetic analysis of the large subunit of Rubisco and the integrase region of Ty3-gypsy elements in various plant species indicated that the retrotransposon-like sequences have different evolutionary histories and their own unique polymorphism in the H. syriacus population. Sequence-tagged site-restriction fragment length polymorphisms (STS-RFLP) analysis also indicated great variability in the numbers and sequences of Ty3-gypsy-like elements within H. syriacus varieties. Ty3-gypsy-like elements may still be active within H. syriacus, since Northern analysis of wounded leaves of H. syriacus variety Saehan with a probe for the integrase domain gave strong hybridization signals. The sequence heterogeneity and ubiquity of the Ty3-gypsy-like elements in H. syriacus genomes could provide reliable DNA markers for line identification as well for the analysis of genetic diversity in H. syriacus.

Original languageEnglish
Pages (from-to)318-327
Number of pages10
JournalMolecules and Cells
Volume19
Issue number3
Publication statusPublished - 2005 Dec 1

Fingerprint

Hibiscus
Integrases
Sequence Tagged Sites
Genome
Ribulose-Bisphosphate Carboxylase
Retroelements
Southern Blotting
Genetic Markers
Restriction Fragment Length Polymorphisms
Population

Keywords

  • Genetic Diversity
  • gypsy-like Retrotransposon
  • Hibiscus syriacus
  • Integrase
  • Phylogenetic Analysis

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics
  • Cell Biology

Cite this

Characterization of Ty3-gypsy-like elements in Hibiscus syriacus. / Jeung, Ji Ung; Cho, Sung Ki; Lee, Seung Jae; Shin, Jeong Sheop.

In: Molecules and Cells, Vol. 19, No. 3, 01.12.2005, p. 318-327.

Research output: Contribution to journalArticle

Jeung, JU, Cho, SK, Lee, SJ & Shin, JS 2005, 'Characterization of Ty3-gypsy-like elements in Hibiscus syriacus', Molecules and Cells, vol. 19, no. 3, pp. 318-327.
Jeung, Ji Ung ; Cho, Sung Ki ; Lee, Seung Jae ; Shin, Jeong Sheop. / Characterization of Ty3-gypsy-like elements in Hibiscus syriacus. In: Molecules and Cells. 2005 ; Vol. 19, No. 3. pp. 318-327.
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