Cochleicola gelatinilyticus gen. Nov., sp. nov., isolated from a marine gastropod, reichia luteostoma

Su Kyoung Shin, Eunji Kim, Sungmi Choi, Hana Yi

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

A yellow, rod-shaped, non-motile, gram-negative, and strictly aerobic bacterial strain, designated LPB0005T, was isolated from a marine gastropod, Reichia luteostoma. Here the genome sequence was determined, which comprised 3,395,737 bp with 2,962 protein-coding genes. The DNA G+C content was 36.3 mol%. The 16S rRNA gene sequence analysis indicated that the isolate represents a novel genus and species in the family Flavobacteriaceae, with relatively low sequence similarities to other closely related genera. The isolate showed chemotaxonomic properties within the range reported for the family Flavobacteriaceae, but possesses many physiological and biochemical characteristics that distinguished it from species in the closely related genera Ulvibacter, Jejudonia, and Aureitalea. Based on phylogenetic, phenotypic, and genomic analyses, strain LPB0005T represents a novel genus and species, for which the name Cochleicola gelatinilyticus gen. nov., sp. nov. is proposed. The type strain is LPB0005T (= KACC 18693T = JCM 31218T).

Original languageEnglish
Pages (from-to)1439-1445
Number of pages7
JournalJournal of Microbiology and Biotechnology
Volume26
Issue number8
DOIs
Publication statusPublished - 2016 Aug 1

Fingerprint

Flavobacteriaceae
Gastropoda
Base Composition
rRNA Genes
Names
Sequence Analysis
Genome
DNA
Proteins

Keywords

  • Cochleicola gelatinilyticus
  • Flavobacteriaceae
  • Novel species
  • Taxonomy

ASJC Scopus subject areas

  • Biotechnology
  • Applied Microbiology and Biotechnology

Cite this

Cochleicola gelatinilyticus gen. Nov., sp. nov., isolated from a marine gastropod, reichia luteostoma. / Shin, Su Kyoung; Kim, Eunji; Choi, Sungmi; Yi, Hana.

In: Journal of Microbiology and Biotechnology, Vol. 26, No. 8, 01.08.2016, p. 1439-1445.

Research output: Contribution to journalArticle

@article{cf4075e8ae4c4e1dbfc86c07954389cd,
title = "Cochleicola gelatinilyticus gen. Nov., sp. nov., isolated from a marine gastropod, reichia luteostoma",
abstract = "A yellow, rod-shaped, non-motile, gram-negative, and strictly aerobic bacterial strain, designated LPB0005T, was isolated from a marine gastropod, Reichia luteostoma. Here the genome sequence was determined, which comprised 3,395,737 bp with 2,962 protein-coding genes. The DNA G+C content was 36.3 mol{\%}. The 16S rRNA gene sequence analysis indicated that the isolate represents a novel genus and species in the family Flavobacteriaceae, with relatively low sequence similarities to other closely related genera. The isolate showed chemotaxonomic properties within the range reported for the family Flavobacteriaceae, but possesses many physiological and biochemical characteristics that distinguished it from species in the closely related genera Ulvibacter, Jejudonia, and Aureitalea. Based on phylogenetic, phenotypic, and genomic analyses, strain LPB0005T represents a novel genus and species, for which the name Cochleicola gelatinilyticus gen. nov., sp. nov. is proposed. The type strain is LPB0005T (= KACC 18693T = JCM 31218T).",
keywords = "Cochleicola gelatinilyticus, Flavobacteriaceae, Novel species, Taxonomy",
author = "Shin, {Su Kyoung} and Eunji Kim and Sungmi Choi and Hana Yi",
year = "2016",
month = "8",
day = "1",
doi = "10.4014/jmb.1604.04083",
language = "English",
volume = "26",
pages = "1439--1445",
journal = "Journal of Microbiology and Biotechnology",
issn = "1017-7825",
publisher = "Korean Society for Microbiolog and Biotechnology",
number = "8",

}

TY - JOUR

T1 - Cochleicola gelatinilyticus gen. Nov., sp. nov., isolated from a marine gastropod, reichia luteostoma

AU - Shin, Su Kyoung

AU - Kim, Eunji

AU - Choi, Sungmi

AU - Yi, Hana

PY - 2016/8/1

Y1 - 2016/8/1

N2 - A yellow, rod-shaped, non-motile, gram-negative, and strictly aerobic bacterial strain, designated LPB0005T, was isolated from a marine gastropod, Reichia luteostoma. Here the genome sequence was determined, which comprised 3,395,737 bp with 2,962 protein-coding genes. The DNA G+C content was 36.3 mol%. The 16S rRNA gene sequence analysis indicated that the isolate represents a novel genus and species in the family Flavobacteriaceae, with relatively low sequence similarities to other closely related genera. The isolate showed chemotaxonomic properties within the range reported for the family Flavobacteriaceae, but possesses many physiological and biochemical characteristics that distinguished it from species in the closely related genera Ulvibacter, Jejudonia, and Aureitalea. Based on phylogenetic, phenotypic, and genomic analyses, strain LPB0005T represents a novel genus and species, for which the name Cochleicola gelatinilyticus gen. nov., sp. nov. is proposed. The type strain is LPB0005T (= KACC 18693T = JCM 31218T).

AB - A yellow, rod-shaped, non-motile, gram-negative, and strictly aerobic bacterial strain, designated LPB0005T, was isolated from a marine gastropod, Reichia luteostoma. Here the genome sequence was determined, which comprised 3,395,737 bp with 2,962 protein-coding genes. The DNA G+C content was 36.3 mol%. The 16S rRNA gene sequence analysis indicated that the isolate represents a novel genus and species in the family Flavobacteriaceae, with relatively low sequence similarities to other closely related genera. The isolate showed chemotaxonomic properties within the range reported for the family Flavobacteriaceae, but possesses many physiological and biochemical characteristics that distinguished it from species in the closely related genera Ulvibacter, Jejudonia, and Aureitalea. Based on phylogenetic, phenotypic, and genomic analyses, strain LPB0005T represents a novel genus and species, for which the name Cochleicola gelatinilyticus gen. nov., sp. nov. is proposed. The type strain is LPB0005T (= KACC 18693T = JCM 31218T).

KW - Cochleicola gelatinilyticus

KW - Flavobacteriaceae

KW - Novel species

KW - Taxonomy

UR - http://www.scopus.com/inward/record.url?scp=84984819097&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84984819097&partnerID=8YFLogxK

U2 - 10.4014/jmb.1604.04083

DO - 10.4014/jmb.1604.04083

M3 - Article

C2 - 27197669

AN - SCOPUS:84984819097

VL - 26

SP - 1439

EP - 1445

JO - Journal of Microbiology and Biotechnology

JF - Journal of Microbiology and Biotechnology

SN - 1017-7825

IS - 8

ER -