Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment

Min Seo Jeon, Jeong Joo Oh, Sang Il Han, Chulhwan Park, Changsu Lee, Yoon-E Choi

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Pseudoalteromonas strains are widely distributed in the marine environment and most have attracted considerable interest owing to their ability to synthesize biologically active metabolites. In this study, we report and describe the genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from the deep-sea sediment of Pacific Ocean at a depth of 2000 m. The complete genome consisted of three contigs with a total genome size of 4,167,407 bp and a GC content of 40.76 l%, and was predicted to contain 4194 protein-coding genes and 131 non-coding RNA genes. The strain MEBiC 03485 genome was also shown to contain genes for diverse metabolic pathways. Genome analysis revealed that the genome of strain MEBiC 03485 was enriched with genes involved in signal transduction, mobile elements, and cold-adaptation, some of which might improve ecological fitness in the deep-sea environment. These findings improve our understanding of microbial adaptation strategies in deep-sea environments.

Original languageEnglish
JournalMarine Genomics
DOIs
Publication statusPublished - 2019 Jan 1

Fingerprint

Pseudoalteromonas
deep-sea sediment
Oceans and Seas
genome
Genome
sediments
gene
deep sea
Pacific Ocean
Genes
genes
Genome Size
Untranslated RNA
Base Composition
Metabolic Networks and Pathways
Signal Transduction
marine environment
signal transduction
biochemical pathways
RNA

Keywords

  • Cold adaptation
  • Mobile element
  • Pseudoalteromonas
  • Signal transduction
  • Whole genome sequence

ASJC Scopus subject areas

  • Aquatic Science
  • Genetics

Cite this

Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment. / Jeon, Min Seo; Oh, Jeong Joo; Han, Sang Il; Park, Chulhwan; Lee, Changsu; Choi, Yoon-E.

In: Marine Genomics, 01.01.2019.

Research output: Contribution to journalArticle

Jeon, Min Seo ; Oh, Jeong Joo ; Han, Sang Il ; Park, Chulhwan ; Lee, Changsu ; Choi, Yoon-E. / Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment. In: Marine Genomics. 2019.
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