Complete nucleotide sequence and phylogenetic classification of the RNA3 from cucumber mosaic virus (CMV) strain: Kor

Shin Je Kim; Hye Sun Cho; Jin Sam You; Seok Yoon Kwon; Eun Kyung Park; Kyung Hee Paek

Complete nucleotide sequence and phylogenetic classification of the RNA3 from cucumber mosaic virus (CMV) strain: Kor

Shin Je Kim, Hye Sun Cho, Jin Sam You, Seok Yoon Kwon, Eun Kyung Park, Kyung Hee Paek

Division of Life Sciences

Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)

Abstract

The complete nucleotide sequence (2,222 nucleotides) of the RNA3 in the cucumber mosaic virus strain Kor (CMV-Kor) isolated from Nicotiana tabacum cv. Burley21 in Korea was determined and compared with those of 7 other cucumber mosaic virus strains at both the nucleotide and amino acid levels. The RNA3 of CMV-Kor possesses two open reading frames which encode the 3a protein (280 amino acids) and the coat protein (218 amino acids). Sequence analysis confirmed the previous biological and serological classification of the RNA3 molecule of CMV-Kor in subgroup I. Comparison of the nucleotide sequence of CMV-Kor showed that the highest degree of homology was found in the strain Y of CMV (96.4%) while the average similarity to the other subgroup was much lower (76.0%).

Original language	English
Pages (from-to)	190-196
Number of pages	7
Journal	Molecules and cells
Volume	6
Issue number	2
Publication status	Published - 1996 Apr 30

ASJC Scopus subject areas

Molecular Biology
Cell Biology

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title = "Complete nucleotide sequence and phylogenetic classification of the RNA3 from cucumber mosaic virus (CMV) strain: Kor",

abstract = "The complete nucleotide sequence (2,222 nucleotides) of the RNA3 in the cucumber mosaic virus strain Kor (CMV-Kor) isolated from Nicotiana tabacum cv. Burley21 in Korea was determined and compared with those of 7 other cucumber mosaic virus strains at both the nucleotide and amino acid levels. The RNA3 of CMV-Kor possesses two open reading frames which encode the 3a protein (280 amino acids) and the coat protein (218 amino acids). Sequence analysis confirmed the previous biological and serological classification of the RNA3 molecule of CMV-Kor in subgroup I. Comparison of the nucleotide sequence of CMV-Kor showed that the highest degree of homology was found in the strain Y of CMV (96.4%) while the average similarity to the other subgroup was much lower (76.0%).",

author = "Kim, {Shin Je} and Cho, {Hye Sun} and You, {Jin Sam} and Kwon, {Seok Yoon} and Park, {Eun Kyung} and Paek, {Kyung Hee}",

year = "1996",

month = apr,

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language = "English",

volume = "6",

pages = "190--196",

journal = "Molecules and Cells",

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publisher = "Korean Society for Molecular and Cellular Biology",

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TY - JOUR

T1 - Complete nucleotide sequence and phylogenetic classification of the RNA3 from cucumber mosaic virus (CMV) strain

T2 - Kor

AU - Kim, Shin Je

AU - Cho, Hye Sun

AU - You, Jin Sam

AU - Kwon, Seok Yoon

AU - Park, Eun Kyung

AU - Paek, Kyung Hee

PY - 1996/4/30

Y1 - 1996/4/30

N2 - The complete nucleotide sequence (2,222 nucleotides) of the RNA3 in the cucumber mosaic virus strain Kor (CMV-Kor) isolated from Nicotiana tabacum cv. Burley21 in Korea was determined and compared with those of 7 other cucumber mosaic virus strains at both the nucleotide and amino acid levels. The RNA3 of CMV-Kor possesses two open reading frames which encode the 3a protein (280 amino acids) and the coat protein (218 amino acids). Sequence analysis confirmed the previous biological and serological classification of the RNA3 molecule of CMV-Kor in subgroup I. Comparison of the nucleotide sequence of CMV-Kor showed that the highest degree of homology was found in the strain Y of CMV (96.4%) while the average similarity to the other subgroup was much lower (76.0%).

AB - The complete nucleotide sequence (2,222 nucleotides) of the RNA3 in the cucumber mosaic virus strain Kor (CMV-Kor) isolated from Nicotiana tabacum cv. Burley21 in Korea was determined and compared with those of 7 other cucumber mosaic virus strains at both the nucleotide and amino acid levels. The RNA3 of CMV-Kor possesses two open reading frames which encode the 3a protein (280 amino acids) and the coat protein (218 amino acids). Sequence analysis confirmed the previous biological and serological classification of the RNA3 molecule of CMV-Kor in subgroup I. Comparison of the nucleotide sequence of CMV-Kor showed that the highest degree of homology was found in the strain Y of CMV (96.4%) while the average similarity to the other subgroup was much lower (76.0%).

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