Complete plastome sequence of Averrhoa carambola L. (Oxalidaceae)

Sangjin Jo, Hoe Won Kim, Young Kee Kim, Se Hwan Cheon, Ki-Joong Kim

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

In this study, we determined the complete plastome sequence of Averrhoa carambola L. (Oxalidaceae) (NCBI acc. no. KX364202). To the best of our knowledge, this is the first reported complete plastome sequence from the order Oxalidales. The gene order and structure of the A. carambola plastome are collinear with the typical plastome of land plants. The complete plastome size is 155,965 bp in length and consists of a large single copy region of 87,217 bp and a small single copy region of 17,496 bp, which are separated by a pair of 25,626-bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 61.2%. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 91 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that A. carambola is a sister group of Euonymus japonicus with 100% bootstrap support.

Original languageEnglish
Pages (from-to)609-611
Number of pages3
JournalMitochondrial DNA Part B: Resources
Volume1
Issue number1
DOIs
Publication statusPublished - 2016

Fingerprint

Introns
Genes
Euonymus
Embryophyta
Gene Order
Transfer RNA
rRNA Genes
Genome
Averrhoa
Oxalidaceae
Proteins

Keywords

  • Averrhoa carambola
  • Oxalidaceae
  • Plastome
  • Tropical fruit

ASJC Scopus subject areas

  • Genetics
  • Molecular Biology

Cite this

Complete plastome sequence of Averrhoa carambola L. (Oxalidaceae). / Jo, Sangjin; Kim, Hoe Won; Kim, Young Kee; Cheon, Se Hwan; Kim, Ki-Joong.

In: Mitochondrial DNA Part B: Resources, Vol. 1, No. 1, 2016, p. 609-611.

Research output: Contribution to journalArticle

Jo, Sangjin ; Kim, Hoe Won ; Kim, Young Kee ; Cheon, Se Hwan ; Kim, Ki-Joong. / Complete plastome sequence of Averrhoa carambola L. (Oxalidaceae). In: Mitochondrial DNA Part B: Resources. 2016 ; Vol. 1, No. 1. pp. 609-611.
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