Evolutionary history of trihelix family and their functional diversification

Yao Qin, Xin Ma, Guanghui Yu, Qi Wang, Liang Wang, Lingrang Kong, Wook Kim, Hong W ei Wang

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

In this study, we carried out an evolutionary, transcriptional, and functional analyses of the trihelix transcription factor family. A total of 319 trihelix members, identified from 11 land plant species, were classified into five clades. The results of phylogeny indicate the binding domains of GT1 and GT2 diverged early in the existence of land plants. Genomic localization revealed that the trihelix family members were highly conserved among cereal species, even though some homeologs generated during the tetraploidy of maize were lost. Three-dimensional structural analyses and an examination of subcellular localization of this family supported the involvement of all five clades in transcriptional regulation. Furthermore, the family members from all clades in sorghum and rice showed a broad and dynamic expression pattern in response to abiotic stresses, indicating regulatory subfunctionalization of their original functions. This finding is further supported by the phenotypes of enhanced tolerance to cold, salt, and drought in transgenic plants overexpressing Sb06g023980 and Sb06g024110. In contrast, few Arobidopsis genes showed inducible expression under abiotic stress conditions, which may indicate a functional shift. Finally, our co-expression analysis points to the involvement of this family in various metabolic processes, implying their further functional divergence.

Original languageEnglish
Pages (from-to)499-510
Number of pages12
JournalDNA Research
Volume21
Issue number5
DOIs
Publication statusPublished - 2014 Oct 1

Fingerprint

Embryophyta
Sorghum
Tetraploidy
Genetically Modified Plants
Droughts
Phylogeny
Zea mays
Transcription Factors
Salts
Phenotype
Genes
Oryza
Edible Grain

Keywords

  • abiotic stress
  • sorghum
  • subfunctionalization
  • trihelix

ASJC Scopus subject areas

  • Medicine(all)

Cite this

Qin, Y., Ma, X., Yu, G., Wang, Q., Wang, L., Kong, L., ... Wang, H. W. E. (2014). Evolutionary history of trihelix family and their functional diversification. DNA Research, 21(5), 499-510. https://doi.org/10.1093/dnares/dsu016

Evolutionary history of trihelix family and their functional diversification. / Qin, Yao; Ma, Xin; Yu, Guanghui; Wang, Qi; Wang, Liang; Kong, Lingrang; Kim, Wook; Wang, Hong W ei.

In: DNA Research, Vol. 21, No. 5, 01.10.2014, p. 499-510.

Research output: Contribution to journalArticle

Qin, Y, Ma, X, Yu, G, Wang, Q, Wang, L, Kong, L, Kim, W & Wang, HWE 2014, 'Evolutionary history of trihelix family and their functional diversification', DNA Research, vol. 21, no. 5, pp. 499-510. https://doi.org/10.1093/dnares/dsu016
Qin, Yao ; Ma, Xin ; Yu, Guanghui ; Wang, Qi ; Wang, Liang ; Kong, Lingrang ; Kim, Wook ; Wang, Hong W ei. / Evolutionary history of trihelix family and their functional diversification. In: DNA Research. 2014 ; Vol. 21, No. 5. pp. 499-510.
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