Flavobacterium gilvum sp. nov., isolated from stream water

Su Kyoung Shin, Yongheon Ha, Yong Joon Cho, Soonsung Kwon, Dongeun Yong, Hana Yi

Research output: Contribution to journalArticle

5 Citations (Scopus)

Abstract

A cream-coloured, non-gliding, aerobic Flavobacterium strain, designated EM1308T, was isolated from stream water. 16S rRNA gene sequence analysis indicated that this isolate is closely related to Flavobacterium glycines NBRC 105008T (97.3 % similarity) and Flavobacterium piscis CCUG 60099T (97.2 %). To evaluate the genomic relatedness of the isolate with its neighbours, the whole genome sequences of strain EM1308T and the type strains of F. glycines and F. piscis were determined. Average nucleotide identities revealed that strain EM1308T is independent from other Flavobacterium species. The properties of major cellular fatty acids, polar lipids, menaquinone and DNA G+C content of the isolate were within the general range for the genus Flavobacterium, but many biochemical and physiological characteristics distinguished the isolate from previously known species. Thus, strain EM1308T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium gilvum sp. nov. is proposed. The type strain is EM1308T (=KACC 18113T=JCM 30144T).

Original languageEnglish
Article number001594
Pages (from-to)153-157
Number of pages5
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume67
Issue number1
DOIs
Publication statusPublished - 2017 Jan 1

Fingerprint

Flavobacterium
Water
new species
water
Glycine
relatedness
Genes
glycine (amino acid)
genomics
fatty acid
Vitamin K 2
genome
lipid
DNA
gene
menaquinones
Fatty Acids
Base Composition
Nucleotides
cream

Keywords

  • ANI
  • dDDH
  • Flavobacteriaceae
  • Flavobacterium
  • Stream water

ASJC Scopus subject areas

  • Microbiology
  • Ecology, Evolution, Behavior and Systematics

Cite this

Flavobacterium gilvum sp. nov., isolated from stream water. / Shin, Su Kyoung; Ha, Yongheon; Cho, Yong Joon; Kwon, Soonsung; Yong, Dongeun; Yi, Hana.

In: International Journal of Systematic and Evolutionary Microbiology, Vol. 67, No. 1, 001594, 01.01.2017, p. 153-157.

Research output: Contribution to journalArticle

Shin, Su Kyoung ; Ha, Yongheon ; Cho, Yong Joon ; Kwon, Soonsung ; Yong, Dongeun ; Yi, Hana. / Flavobacterium gilvum sp. nov., isolated from stream water. In: International Journal of Systematic and Evolutionary Microbiology. 2017 ; Vol. 67, No. 1. pp. 153-157.
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