Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica

Yon Mi Park; Jeong Hoon Kim; Se Hun Gu; Sook Young Lee; Min Goo Lee; Yoon Kyoo Kang; Sung Ho Kang; Hak Jun Kim; Jin Won Song

doi:10.1016/j.virol.2011.10.008

Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica

Yon Mi Park, Jeong Hoon Kim, Se Hun Gu, Sook Young Lee, Min Goo Lee, Yoon Kyoo Kang, Sung Ho Kang, Hak Jun Kim, Jin Won Song

Department of Biomedical Sciences

Research output: Contribution to journal › Article › peer-review

46 Citations (Scopus)

Abstract

Adenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSAdV belonged to the genus Siadenovirus, family Adenoviridae. This is the first evidence of a novel adenovirus, SPSAdV, from a large polar seabird (family Stercorariidae) in Antarctica.

Original language	English
Pages (from-to)	144-150
Number of pages	7
Journal	Virology
Volume	422
Issue number	1
DOIs	https://doi.org/10.1016/j.virol.2011.10.008
Publication status	Published - 2012 Jan 5

Keywords

Adenovirus
Antarctica
Catharacta maccormicki
Full genome sequence
South Polar skua

ASJC Scopus subject areas

Virology

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10.1016/j.virol.2011.10.008

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title = "Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica",

abstract = "Adenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSAdV belonged to the genus Siadenovirus, family Adenoviridae. This is the first evidence of a novel adenovirus, SPSAdV, from a large polar seabird (family Stercorariidae) in Antarctica.",

keywords = "Adenovirus, Antarctica, Catharacta maccormicki, Full genome sequence, South Polar skua",

author = "Park, {Yon Mi} and Kim, {Jeong Hoon} and Gu, {Se Hun} and Lee, {Sook Young} and Lee, {Min Goo} and Kang, {Yoon Kyoo} and Kang, {Sung Ho} and Kim, {Hak Jun} and Song, {Jin Won}",

note = "Funding Information: We thank Dr. Hae Ji Kang for phylogenetic analysis and Dr. Richard Yanagihara for editorial assistance. This research was supported in part by a Core Research Support for Senior Researchers, National Research Foundation of Korea ( 2010-002-7564 ), KOPRI (grant number PE11030), and Institute of Biomedical Science & Food Safety, Korea University .",

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AU - Lee, Min Goo

AU - Kang, Yoon Kyoo

AU - Kang, Sung Ho

AU - Kim, Hak Jun

AU - Song, Jin Won

N1 - Funding Information: We thank Dr. Hae Ji Kang for phylogenetic analysis and Dr. Richard Yanagihara for editorial assistance. This research was supported in part by a Core Research Support for Senior Researchers, National Research Foundation of Korea ( 2010-002-7564 ), KOPRI (grant number PE11030), and Institute of Biomedical Science & Food Safety, Korea University .

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N2 - Adenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSAdV belonged to the genus Siadenovirus, family Adenoviridae. This is the first evidence of a novel adenovirus, SPSAdV, from a large polar seabird (family Stercorariidae) in Antarctica.

AB - Adenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSAdV belonged to the genus Siadenovirus, family Adenoviridae. This is the first evidence of a novel adenovirus, SPSAdV, from a large polar seabird (family Stercorariidae) in Antarctica.

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KW - Full genome sequence

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Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica

Abstract

Keywords

ASJC Scopus subject areas

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