Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

Byoungnam Min, Hongjae Park, Yeongseon Jang, Jae-Jin Kim, Kyoung Heon Kim, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Igor V. Grigoriev, Joseph W. Spatafora, In-Geol Choi

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4. Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.

Original languageEnglish
Pages (from-to)42-43
Number of pages2
JournalJournal of Biotechnology
Volume211
DOIs
Publication statusPublished - 2015 Oct 1

Fingerprint

Fungi
Genome
Polycyclic Aromatic Hydrocarbons
Korea
Heavy Metals
Genes
Coloring Agents
Carbohydrates
RNA
Enzymes
lignin peroxidase
lignocellulose

Keywords

  • Mycoremediation
  • Schizopora paradoxa KUC8140
  • White rot
  • Wood decaying fungus

ASJC Scopus subject areas

  • Biotechnology
  • Applied Microbiology and Biotechnology

Cite this

Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. / Min, Byoungnam; Park, Hongjae; Jang, Yeongseon; Kim, Jae-Jin; Kim, Kyoung Heon; Pangilinan, Jasmyn; Lipzen, Anna; Riley, Robert; Grigoriev, Igor V.; Spatafora, Joseph W.; Choi, In-Geol.

In: Journal of Biotechnology, Vol. 211, 01.10.2015, p. 42-43.

Research output: Contribution to journalArticle

Min, Byoungnam ; Park, Hongjae ; Jang, Yeongseon ; Kim, Jae-Jin ; Kim, Kyoung Heon ; Pangilinan, Jasmyn ; Lipzen, Anna ; Riley, Robert ; Grigoriev, Igor V. ; Spatafora, Joseph W. ; Choi, In-Geol. / Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. In: Journal of Biotechnology. 2015 ; Vol. 211. pp. 42-43.
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AU - Kim, Jae-Jin

AU - Kim, Kyoung Heon

AU - Pangilinan, Jasmyn

AU - Lipzen, Anna

AU - Riley, Robert

AU - Grigoriev, Igor V.

AU - Spatafora, Joseph W.

AU - Choi, In-Geol

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