Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

Byoungnam Min; Hongjae Park; Yeongseon Jang; Jae Jin Kim; Kyoung Heon Kim; Jasmyn Pangilinan; Anna Lipzen; Robert Riley; Igor V. Grigoriev; Joseph W. Spatafora; In Geol Choi

doi:10.1016/j.jbiotec.2015.06.426

Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

Byoungnam Min, Hongjae Park, Yeongseon Jang, Jae Jin Kim, Kyoung Heon Kim, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Igor V. Grigoriev, Joseph W. Spatafora, In Geol Choi

Research output: Contribution to journal › Article › peer-review

14 Citations (Scopus)

Abstract

Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4. Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.

Original language	English
Pages (from-to)	42-43
Number of pages	2
Journal	Journal of Biotechnology
Volume	211
DOIs	https://doi.org/10.1016/j.jbiotec.2015.06.426
Publication status	Published - 2015 Oct 1

Keywords

Mycoremediation
Schizopora paradoxa KUC8140
White rot
Wood decaying fungus

ASJC Scopus subject areas

Biotechnology
Bioengineering
Applied Microbiology and Biotechnology

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10.1016/j.jbiotec.2015.06.426

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title = "Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation",

abstract = "Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4. Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.",

keywords = "Mycoremediation, Schizopora paradoxa KUC8140, White rot, Wood decaying fungus",

author = "Byoungnam Min and Hongjae Park and Yeongseon Jang and Kim, {Jae Jin} and Kim, {Kyoung Heon} and Jasmyn Pangilinan and Anna Lipzen and Robert Riley and Grigoriev, {Igor V.} and Spatafora, {Joseph W.} and Choi, {In Geol}",

note = "Funding Information: This work is supported by Korea University and the Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01044003 ) Rural Development Administration, Republic of Korea . The work conducted by Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 . Publisher Copyright: {\textcopyright} 2015 Elsevier B.V.",

year = "2015",

month = oct,

day = "1",

doi = "10.1016/j.jbiotec.2015.06.426",

language = "English",

volume = "211",

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journal = "Journal of Biotechnology",

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TY - JOUR

T1 - Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

AU - Min, Byoungnam

AU - Park, Hongjae

AU - Jang, Yeongseon

AU - Kim, Jae Jin

AU - Kim, Kyoung Heon

AU - Pangilinan, Jasmyn

AU - Lipzen, Anna

AU - Riley, Robert

AU - Grigoriev, Igor V.

AU - Spatafora, Joseph W.

AU - Choi, In Geol

N1 - Funding Information: This work is supported by Korea University and the Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01044003 ) Rural Development Administration, Republic of Korea . The work conducted by Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 . Publisher Copyright: © 2015 Elsevier B.V.

PY - 2015/10/1

Y1 - 2015/10/1

N2 - Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4. Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.

AB - Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4. Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.

KW - Mycoremediation

KW - Schizopora paradoxa KUC8140

KW - White rot

KW - Wood decaying fungus

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DO - 10.1016/j.jbiotec.2015.06.426

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C2 - 26188242

AN - SCOPUS:84937835091

SN - 0168-1656

VL - 211

SP - 42

EP - 43

JO - Journal of Biotechnology

JF - Journal of Biotechnology

ER -

Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

Abstract

Keywords

ASJC Scopus subject areas

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