Hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease

Woongsun Choi, Sang Yun Yeom, Junsun Kim, Seungwon Jung, Seungho Jung, Tae Soup Shim, Sang Kyung Kim, Ji Yoon Kang, Soo Hyun Lee, Il Joo Cho, Jungkyu Choi, Nakwon Choi

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Quantitative polymerase chain reaction (qPCR) renders profiling of genes of interest less time-consuming and cost-effective. Recently, multiplex profiling of miRNAs has enabled identifying or investigating predominant miRNAs for various diseases such as cancers and neurodegenerative diseases. Conventional multiplex qPCR technologies mostly use colorimetric measurements in solution phase, yet not only suffer from limited multiplexing capacity but also require target-screening processes due to non-specific binding between targets and primers. Here, we present hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease (AD). Our methodology promises two key advantages compared with the conventional solution-based PCR: 1) nearly no non-specific crosstalks between targets and primers, and 2) practically valuable multiplexing by spatial encoding within a single microchamber. Specifically, we immobilized hydrogel microposts (~ 400 µm in diameter) within commercially available polycarbonate PCR chips by multi-step ultraviolet (UV, 365 nm) exposure. We optimized this photoimmobilization for thermal cycles of PCR as well. Acrylated forward primers incorporated in polyethylene glycol diacrylate (PEGDA) posts played a crucial role to confine fluorescent signal of cDNA amplification within the PEGDA hydrogel. To demonstrate the potential of our platform, we successfully verified multiplex detection of five miRNAs, which were reported to be highly correlated with AD, from a complex buffer of human plasma.

Original languageEnglish
Pages (from-to)235-244
Number of pages10
JournalBiosensors and Bioelectronics
Volume101
DOIs
Publication statusPublished - 2018 Mar 15

Fingerprint

Hydrogel
Multiplex Polymerase Chain Reaction
Polymerase chain reaction
MicroRNAs
Hydrogels
Alzheimer Disease
Multiplexing
Polymerase Chain Reaction
Polyethylene glycols
polycarbonate
Neurodegenerative diseases
Plasma (human)
Crosstalk
Polycarbonates
Amplification
Screening
Genes
Neurodegenerative Diseases
Buffers
Complementary DNA

Keywords

  • Alzheimer's disease
  • Hydrogel micropost
  • miRNA
  • Multiplex qPCR
  • Plastic substrate
  • Polyethylene glycol diacrylate (PEGDA)

ASJC Scopus subject areas

  • Biotechnology
  • Biophysics
  • Biomedical Engineering
  • Electrochemistry

Cite this

Hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease. / Choi, Woongsun; Yeom, Sang Yun; Kim, Junsun; Jung, Seungwon; Jung, Seungho; Shim, Tae Soup; Kim, Sang Kyung; Kang, Ji Yoon; Lee, Soo Hyun; Cho, Il Joo; Choi, Jungkyu; Choi, Nakwon.

In: Biosensors and Bioelectronics, Vol. 101, 15.03.2018, p. 235-244.

Research output: Contribution to journalArticle

Choi, W, Yeom, SY, Kim, J, Jung, S, Jung, S, Shim, TS, Kim, SK, Kang, JY, Lee, SH, Cho, IJ, Choi, J & Choi, N 2018, 'Hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease', Biosensors and Bioelectronics, vol. 101, pp. 235-244. https://doi.org/10.1016/j.bios.2017.10.039
Choi, Woongsun ; Yeom, Sang Yun ; Kim, Junsun ; Jung, Seungwon ; Jung, Seungho ; Shim, Tae Soup ; Kim, Sang Kyung ; Kang, Ji Yoon ; Lee, Soo Hyun ; Cho, Il Joo ; Choi, Jungkyu ; Choi, Nakwon. / Hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease. In: Biosensors and Bioelectronics. 2018 ; Vol. 101. pp. 235-244.
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