Identification of the biosynthetic gene cluster for the antibiotic polyketide L-155,175 in Streptomyces hygroscopicus

Eun Young Kim, Jae Woo Han, Jee Yeon Lee, Beom Seok Kim

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

Abstract: The antibiotic L-155,175, a potent antiparasitic and antifungal compound, has an unusual structure involving 16-membered macrolides that contain a tetrahydropyran ring connected through a three-carbon linker chain. To identify the biosynthetic gene cluster for L-155,175, a genomic DNA library of Streptomyces hygroscopicus ATCC31955 was constructed and screened with a degenerate primer set designed from a conserved region of the ketosynthase (KS) domain. Sequence analysis of a fosmid clone, pEY1D8 (34 kb), revealed multiple open reading frames (ORFs) encoding type I polyketide synthase (PKS). To determine whether the cloned genes are involved in L-155,175 biosynthesis, a deletion mutant (1D8m) was generated by homologous recombination, in which the gene encoding the KS domain was substituted with an apramycin-resistance gene by PCR-targeted Streptomyces gene replacement. LC-MS analysis showed that L-155,175 production was completely abolished in the 1D8m strain, thereby proving that the cloned gene is responsible for L-155,175 biosynthesis. The sequencing of two other fosmid clones (pEY8B10 and pEY1C9) harboring overlapping sequences from pEY1D8 revealed a 60-kb DNA segment encoding six ORFs for type I PKS harboring 12 modules. The domain organization of the PKS modules encoded by PKS exactly matched the structure of L-155,175. This is the first report on the gene cluster involved in the biosynthesis of L-155,175.

Original languageEnglish
Pages (from-to)543-550
Number of pages8
JournalFolia Microbiologica
Volume57
Issue number6
DOIs
Publication statusPublished - 2012 Nov 1

Fingerprint

hygrolidin K2
Polyketides
Streptomyces
Multigene Family
Polyketide Synthases
Anti-Bacterial Agents
Genes
Open Reading Frames
Clone Cells
Antiparasitic Agents
Genomic Library
Homologous Recombination
Macrolides
Gene Library
Sequence Analysis

ASJC Scopus subject areas

  • Microbiology

Cite this

Identification of the biosynthetic gene cluster for the antibiotic polyketide L-155,175 in Streptomyces hygroscopicus. / Kim, Eun Young; Han, Jae Woo; Lee, Jee Yeon; Kim, Beom Seok.

In: Folia Microbiologica, Vol. 57, No. 6, 01.11.2012, p. 543-550.

Research output: Contribution to journalArticle

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