Improving estimation of fiber orientations in diffusion MRI using inter-subject information sharing

Geng Chen, Pei Zhang, Ke Li, Chong Yaw Wee, Yafeng Wu, Dinggang Shen, Pew Thian Yap

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Diffusion magnetic resonance imaging is widely used to investigate diffusion patterns of water molecules in the human brain. It provides information that is useful for tracing axonal bundles and inferring brain connectivity. Diffusion axonal tracing, namely tractography, relies on local directional information provided by the orientation distribution functions (ODFs) estimated at each voxel. To accurately estimate ODFs, data of good signal-to-noise ratio and sufficient angular samples are desired. This is however not always available in practice. In this paper, we propose to improve ODF estimation by using inter-subject image correlation. Specifically, we demonstrate that diffusion-weighted images acquired from different subjects can be transformed to the space of a target subject to drastically increase the number of angular samples to improve ODF estimation. This is largely due to the incoherence of the angular samples generated when the diffusion signals are reoriented and warped to the target space. To reorient the diffusion signals, we propose a new spatial normalization method that directly acts on diffusion signals using local affine transforms. Experiments on both synthetic data and real data show that our method can reduce noise-induced artifacts, such as spurious ODF peaks, and yield more coherent orientations.

Original languageEnglish
Article number37847
JournalScientific Reports
Volume6
DOIs
Publication statusPublished - 2016 Nov 28

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Diffusion Magnetic Resonance Imaging
Information Dissemination
Brain
Signal-To-Noise Ratio
Artifacts
Noise
Water

ASJC Scopus subject areas

  • General

Cite this

Improving estimation of fiber orientations in diffusion MRI using inter-subject information sharing. / Chen, Geng; Zhang, Pei; Li, Ke; Wee, Chong Yaw; Wu, Yafeng; Shen, Dinggang; Yap, Pew Thian.

In: Scientific Reports, Vol. 6, 37847, 28.11.2016.

Research output: Contribution to journalArticle

Chen, Geng ; Zhang, Pei ; Li, Ke ; Wee, Chong Yaw ; Wu, Yafeng ; Shen, Dinggang ; Yap, Pew Thian. / Improving estimation of fiber orientations in diffusion MRI using inter-subject information sharing. In: Scientific Reports. 2016 ; Vol. 6.
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