Induced optical activity of DNA-templated cyanine dye aggregates: Exciton coupling theory and TD-DFT studies

Michał Maj, Jonggu Jeon, Robert W. Góra, Minhaeng Cho

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Certain cyanine dye molecules have been observed to self-assemble in DNA templates to form large chiral aggregates, which exhibit induced circular dichroism. The structure and circular dichroism (CD) of one such system, aggregates of a cationic DiSC2(5) cyanine dye, are investigated using the time-dependent Kohn-Sham density functional theory (TD-DFT) and exciton coupling model. A series of TD-DFT calculations on the aggregates with one, two, and four dye molecules clearly shows the onset of CD induced by the helically twisted structure compatible with the minor groove of DNA templates. More simplified exciton coupling model analysis successfully reproduces the major positive Cotton effect observed in the experiment as well as the TD-DFT calculations, but it is unable to capture minor features of the CD spectrum that are closely related to absolute configurations of constituent dyes in the complex. We assess the performance of various methods used for evaluation of the electronic coupling energies between interacting chromophores. Our results confirm that the interchromophore interactions in cyanine dye aggregates are primarily electrostatic in nature and indicate that the exciton coupling model is adequate for studying induced CD of self-assembled aggregates of cyanine dye molecules.

Original languageEnglish
Pages (from-to)5909-5918
Number of pages10
JournalJournal of Physical Chemistry A
Volume117
Issue number29
DOIs
Publication statusPublished - 2013 Jul 25

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Optical Rotation
optical activity
Circular Dichroism
Density functional theory
Coloring Agents
deoxyribonucleic acid
dichroism
dyes
excitons
density functional theory
DNA
Molecules
templates
molecules
Chromophores
Static Electricity
cotton
Cotton
Electrostatics
grooves

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry

Cite this

Induced optical activity of DNA-templated cyanine dye aggregates : Exciton coupling theory and TD-DFT studies. / Maj, Michał; Jeon, Jonggu; Góra, Robert W.; Cho, Minhaeng.

In: Journal of Physical Chemistry A, Vol. 117, No. 29, 25.07.2013, p. 5909-5918.

Research output: Contribution to journalArticle

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