Proteomics-based target identification

Bengamides as a new class of methionine aminopeptidase inhibitors

Harry Towbin, Kenneth W. Bair, James A. DeCaprio, Michael J. Eck, Sunkyu Kim, Frederick R. Kinder, Anthony Morollo, Dieter R. Mueller, Patrick Schindler, Hyun Kyu Song, Jan Van Oostrum, Richard W. Versace, Hans Voshol, Jeanette Wood, Sonya Zabludoff, Penny E. Phillips

Research output: Contribution to journalArticle

122 Citations (Scopus)

Abstract

LAF389 is a synthetic analogue of bengamides, a class of marine natural products that produce inhibitory effects on tumor growth in vitro and in vivo. A proteomics-based approach has been used to identify signaling pathways affected by bengamides. LAF389 treatment of cells resulted in altered mobility of a subset of proteins on two-dimensional gel electrophoresis. Detailed analysis of one of the proteins, 14-3-3γ, showed that bengamide treatment resulted in retention of the amino-terminal methionine, suggesting that bengamides directly or indirectly inhibited methionine aminopeptidases (MetAps). Both known MetAps are inhibited by LAF389. Short interfering RNA suppression of MetAp2 also altered amino-terminal processing of 14-3-3γ. A high resolution structure of human MetAp2 co-crystallized with a bengamide shows that the compound binds in a manner that mimics peptide substrates. Additionally, the structure reveals that three key hydroxyl groups on the inhibitor coordinate the di-cobalt center in the enzyme active site.

Original languageEnglish
Pages (from-to)52964-52971
Number of pages8
JournalJournal of Biological Chemistry
Volume278
Issue number52
DOIs
Publication statusPublished - 2003 Dec 26
Externally publishedYes

Fingerprint

Aminopeptidases
Methionine
Proteomics
14-3-3 Proteins
Electrophoresis, Gel, Two-Dimensional
Cobalt
Biological Products
Electrophoresis
Hydroxyl Radical
Small Interfering RNA
Tumors
Catalytic Domain
Gels
Cells
Peptides
Substrates
Enzymes
Growth
Processing
3,4,5-trihydroxy-2--methoxy-8,8-dimethyl-N-(hexahydro-2-oxo-6-(cyclohexylcarbonyl)oxy-2H-azepin-3-yl)non-6-enamide

ASJC Scopus subject areas

  • Biochemistry

Cite this

Towbin, H., Bair, K. W., DeCaprio, J. A., Eck, M. J., Kim, S., Kinder, F. R., ... Phillips, P. E. (2003). Proteomics-based target identification: Bengamides as a new class of methionine aminopeptidase inhibitors. Journal of Biological Chemistry, 278(52), 52964-52971. https://doi.org/10.1074/jbc.M309039200

Proteomics-based target identification : Bengamides as a new class of methionine aminopeptidase inhibitors. / Towbin, Harry; Bair, Kenneth W.; DeCaprio, James A.; Eck, Michael J.; Kim, Sunkyu; Kinder, Frederick R.; Morollo, Anthony; Mueller, Dieter R.; Schindler, Patrick; Song, Hyun Kyu; Van Oostrum, Jan; Versace, Richard W.; Voshol, Hans; Wood, Jeanette; Zabludoff, Sonya; Phillips, Penny E.

In: Journal of Biological Chemistry, Vol. 278, No. 52, 26.12.2003, p. 52964-52971.

Research output: Contribution to journalArticle

Towbin, H, Bair, KW, DeCaprio, JA, Eck, MJ, Kim, S, Kinder, FR, Morollo, A, Mueller, DR, Schindler, P, Song, HK, Van Oostrum, J, Versace, RW, Voshol, H, Wood, J, Zabludoff, S & Phillips, PE 2003, 'Proteomics-based target identification: Bengamides as a new class of methionine aminopeptidase inhibitors', Journal of Biological Chemistry, vol. 278, no. 52, pp. 52964-52971. https://doi.org/10.1074/jbc.M309039200
Towbin, Harry ; Bair, Kenneth W. ; DeCaprio, James A. ; Eck, Michael J. ; Kim, Sunkyu ; Kinder, Frederick R. ; Morollo, Anthony ; Mueller, Dieter R. ; Schindler, Patrick ; Song, Hyun Kyu ; Van Oostrum, Jan ; Versace, Richard W. ; Voshol, Hans ; Wood, Jeanette ; Zabludoff, Sonya ; Phillips, Penny E. / Proteomics-based target identification : Bengamides as a new class of methionine aminopeptidase inhibitors. In: Journal of Biological Chemistry. 2003 ; Vol. 278, No. 52. pp. 52964-52971.
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