Sequence analysis of the Lactobacillus temperate phage Sha1

Bo Hyun Yoon, Se Hwan Jang, Hyo-Ihl Chang

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Bacteriophage Sha1, a newly isolated temperate phage from a mitomycin-C-induced lysate of Lactobacillus plantarum isolated from Kimchi, has an isometric head (58 nm × 60 nm) and a long tail (259 nm × 11 nm). The double-strand DNA genome of the phage Sha1 was 41,726 base pairs (bp) long, with a G+C content of 40. 61%. Bioinformatic analysis of Sha1 shows that this phage contains 58 putative open reading frames (ORFs). Sha1 can be classified as a member of the large family Siphoviridae by genomic structure and morphology. To our knowledge, this is the first report of genomic sequencing and characterization of temperate phage Sha1 from wild-type L. plantarum isolated from kimchi in Korea.

Original languageEnglish
Pages (from-to)1681-1684
Number of pages4
JournalArchives of Virology
Volume156
Issue number9
DOIs
Publication statusPublished - 2011 Sep 1

Fingerprint

Bacteriophages
Lactobacillus
Sequence Analysis
Lactobacillus plantarum
Siphoviridae
Base Composition
Mitomycin
Bioinformatics
Korea
Computational Biology
Base Pairing
Open Reading Frames
Genes
Head
Genome
DNA

ASJC Scopus subject areas

  • Virology

Cite this

Sequence analysis of the Lactobacillus temperate phage Sha1. / Yoon, Bo Hyun; Jang, Se Hwan; Chang, Hyo-Ihl.

In: Archives of Virology, Vol. 156, No. 9, 01.09.2011, p. 1681-1684.

Research output: Contribution to journalArticle

Yoon, Bo Hyun ; Jang, Se Hwan ; Chang, Hyo-Ihl. / Sequence analysis of the Lactobacillus temperate phage Sha1. In: Archives of Virology. 2011 ; Vol. 156, No. 9. pp. 1681-1684.
@article{9a6df65006b34f9b8b81f15857b72197,
title = "Sequence analysis of the Lactobacillus temperate phage Sha1",
abstract = "Bacteriophage Sha1, a newly isolated temperate phage from a mitomycin-C-induced lysate of Lactobacillus plantarum isolated from Kimchi, has an isometric head (58 nm × 60 nm) and a long tail (259 nm × 11 nm). The double-strand DNA genome of the phage Sha1 was 41,726 base pairs (bp) long, with a G+C content of 40. 61{\%}. Bioinformatic analysis of Sha1 shows that this phage contains 58 putative open reading frames (ORFs). Sha1 can be classified as a member of the large family Siphoviridae by genomic structure and morphology. To our knowledge, this is the first report of genomic sequencing and characterization of temperate phage Sha1 from wild-type L. plantarum isolated from kimchi in Korea.",
author = "Yoon, {Bo Hyun} and Jang, {Se Hwan} and Hyo-Ihl Chang",
year = "2011",
month = "9",
day = "1",
doi = "10.1007/s00705-011-1048-2",
language = "English",
volume = "156",
pages = "1681--1684",
journal = "The BMJ",
issn = "0730-6512",
publisher = "Kluwer Academic Publishers",
number = "9",

}

TY - JOUR

T1 - Sequence analysis of the Lactobacillus temperate phage Sha1

AU - Yoon, Bo Hyun

AU - Jang, Se Hwan

AU - Chang, Hyo-Ihl

PY - 2011/9/1

Y1 - 2011/9/1

N2 - Bacteriophage Sha1, a newly isolated temperate phage from a mitomycin-C-induced lysate of Lactobacillus plantarum isolated from Kimchi, has an isometric head (58 nm × 60 nm) and a long tail (259 nm × 11 nm). The double-strand DNA genome of the phage Sha1 was 41,726 base pairs (bp) long, with a G+C content of 40. 61%. Bioinformatic analysis of Sha1 shows that this phage contains 58 putative open reading frames (ORFs). Sha1 can be classified as a member of the large family Siphoviridae by genomic structure and morphology. To our knowledge, this is the first report of genomic sequencing and characterization of temperate phage Sha1 from wild-type L. plantarum isolated from kimchi in Korea.

AB - Bacteriophage Sha1, a newly isolated temperate phage from a mitomycin-C-induced lysate of Lactobacillus plantarum isolated from Kimchi, has an isometric head (58 nm × 60 nm) and a long tail (259 nm × 11 nm). The double-strand DNA genome of the phage Sha1 was 41,726 base pairs (bp) long, with a G+C content of 40. 61%. Bioinformatic analysis of Sha1 shows that this phage contains 58 putative open reading frames (ORFs). Sha1 can be classified as a member of the large family Siphoviridae by genomic structure and morphology. To our knowledge, this is the first report of genomic sequencing and characterization of temperate phage Sha1 from wild-type L. plantarum isolated from kimchi in Korea.

UR - http://www.scopus.com/inward/record.url?scp=80052272946&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80052272946&partnerID=8YFLogxK

U2 - 10.1007/s00705-011-1048-2

DO - 10.1007/s00705-011-1048-2

M3 - Article

VL - 156

SP - 1681

EP - 1684

JO - The BMJ

JF - The BMJ

SN - 0730-6512

IS - 9

ER -