Spectral Graph Analyses of Water Hydrogen-Bonding Network and Osmolyte Aggregate Structures in Osmolyte-Water Solutions

Hochan Lee, Jun Ho Choi, Pramod Kumar Verma, Minhaeng Cho

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

Recently, it was shown that the spectral graph theory is exceptionally useful for understanding not only morphological structural differences in ion aggregates but also similarities between an ion network and a water H-bonding network in highly concentrated salt solutions. Here, we present spectral graph analysis results on osmolyte aggregates and water H-bonding network structures in aqueous renal osmolyte solutions. The quantitative analyses of the adjacency matrices that are graph-theoretical representations of aggregates of osmolyte molecules and water H-bond structures provide the ensemble average eigenvalue spectra and degree distribution. We show that urea molecules form quite different morphological structures compared to other protecting renal osmolyte molecules in water, particularly sorbitol and trimethylglycine, which are well-known protecting osmolytes, and at high concentrations exhibit a strong propensity to form morphological structures that are graph-theoretically similar to that of the water H-bond network. Conversely, urea molecules, even at similarly high concentrations, form separated clusters instead of extended osmolyte-osmolyte networks. This difference in morphological structure of osmolyte-osmolyte aggregates between protecting and destabilizing osmolytes is considered to be an important observation that led us to propose a hypothesis on the osmolyte aggregate growth mechanism via either osmolyte network formation or segregated osmolyte cluster formation. We anticipate that the present spectral graph analyses of osmolyte aggregate structures and their interplay with the water H-bond network structure in highly concentrated renal osmolyte solutions could provide important information on the osmolyte effects of not only water structures but also protein stability in biologically relevant osmolyte solutions.

Original languageEnglish
Pages (from-to)14402-14412
Number of pages11
JournalJournal of Physical Chemistry B
Volume119
Issue number45
DOIs
Publication statusPublished - 2015 Oct 16

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Hydrogen bonds
Water
hydrogen
water
Hydrogen
Molecules
ureas
Urea
molecules
Ions
graph theory
Sorbitol
Graph theory
ions
eigenvalues
Salts
salts
proteins
Proteins
matrices

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Materials Chemistry
  • Surfaces, Coatings and Films

Cite this

Spectral Graph Analyses of Water Hydrogen-Bonding Network and Osmolyte Aggregate Structures in Osmolyte-Water Solutions. / Lee, Hochan; Choi, Jun Ho; Verma, Pramod Kumar; Cho, Minhaeng.

In: Journal of Physical Chemistry B, Vol. 119, No. 45, 16.10.2015, p. 14402-14412.

Research output: Contribution to journalArticle

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