The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)

Sangjin Jo, Hoe Won Kim, Young Kee Kim, Jung Yeon Sohn, Se Hwan Cheon, Ki-Joong Kim

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support.

Original languageEnglish
Pages (from-to)722-724
Number of pages3
JournalMitochondrial DNA Part B: Resources
Volume2
Issue number2
DOIs
Publication statusPublished - 2017 Dec 20

Fingerprint

Garcinia mangostana
Clusiaceae
Fruit
Genes
Erythroxylaceae
Transfer RNA
rRNA Genes
Introns
Genome

Keywords

  • Clusiaceae
  • Garcinia mangostana
  • gene and intron losses
  • Plastome
  • small inversition

ASJC Scopus subject areas

  • Genetics
  • Molecular Biology

Cite this

The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae). / Jo, Sangjin; Kim, Hoe Won; Kim, Young Kee; Sohn, Jung Yeon; Cheon, Se Hwan; Kim, Ki-Joong.

In: Mitochondrial DNA Part B: Resources, Vol. 2, No. 2, 20.12.2017, p. 722-724.

Research output: Contribution to journalArticle

Jo, Sangjin ; Kim, Hoe Won ; Kim, Young Kee ; Sohn, Jung Yeon ; Cheon, Se Hwan ; Kim, Ki-Joong. / The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae). In: Mitochondrial DNA Part B: Resources. 2017 ; Vol. 2, No. 2. pp. 722-724.
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