The early stage of bacterial genome-reductive evolution in the host

Han Song, Junghyun Hwang, Hyojeong Yi, Ricky L. Ulrich, Yan Yu, William C. Nierman, Heenam Kim

Research output: Contribution to journalArticle

62 Citations (Scopus)

Abstract

The equine-associated obligate pathogen Burkholderia mallei was developed by reductive evolution involving a substantial portion of the genome from Burkholderia pseudomallei, a free-living opportunistic pathogen. With its short history of divergence (~3.5 myr), B. mallei provides an excellent resource to study the early steps in bacterial genome reductive evolution in the host. By examining 20 genomes of B. mallei and B. pseudomallei, we found that stepwise massive expansion of IS (insertion sequence) elements ISBma1, ISBma2, and IS407A occurred during the evolution of B. mallei. Each element proliferated through the sites where its target selection preference was met. Then, ISBma1 and ISBma2 contributed to the further spread of IS407A by providing secondary insertion sites. This spread increased genomic deletions and rearrangements, which were predominantly mediated by IS407A. There were also nucleotide-level disruptions in a large number of genes. However, no significant signs of erosion were yet noted in these genes. Intriguingly, all these genomic modifications did not seriously alter the gene expression patterns inherited from B. pseudomallei. This efficient and elaborate genomic transition was enabled largely through the formation of the highly flexible IS-blended genome and the guidance by selective forces in the host. The detailed IS intervention, unveiled for the first time in this study, may represent the key component of a general mechanism for early bacterial evolution in the host.

Original languageEnglish
Pages (from-to)1-10
Number of pages10
JournalPLoS Pathogens
Volume6
Issue number5
DOIs
Publication statusPublished - 2010 May 1

Fingerprint

Burkholderia mallei
Bacterial Genomes
Burkholderia pseudomallei
Insertional Mutagenesis
Genome
DNA Transposable Elements
Genes
Horses
Nucleotides
Gene Expression

ASJC Scopus subject areas

  • Microbiology
  • Parasitology
  • Virology
  • Immunology
  • Genetics
  • Molecular Biology

Cite this

Song, H., Hwang, J., Yi, H., Ulrich, R. L., Yu, Y., Nierman, W. C., & Kim, H. (2010). The early stage of bacterial genome-reductive evolution in the host. PLoS Pathogens, 6(5), 1-10. https://doi.org/10.1371/journal.ppat.1000922

The early stage of bacterial genome-reductive evolution in the host. / Song, Han; Hwang, Junghyun; Yi, Hyojeong; Ulrich, Ricky L.; Yu, Yan; Nierman, William C.; Kim, Heenam.

In: PLoS Pathogens, Vol. 6, No. 5, 01.05.2010, p. 1-10.

Research output: Contribution to journalArticle

Song, H, Hwang, J, Yi, H, Ulrich, RL, Yu, Y, Nierman, WC & Kim, H 2010, 'The early stage of bacterial genome-reductive evolution in the host', PLoS Pathogens, vol. 6, no. 5, pp. 1-10. https://doi.org/10.1371/journal.ppat.1000922
Song H, Hwang J, Yi H, Ulrich RL, Yu Y, Nierman WC et al. The early stage of bacterial genome-reductive evolution in the host. PLoS Pathogens. 2010 May 1;6(5):1-10. https://doi.org/10.1371/journal.ppat.1000922
Song, Han ; Hwang, Junghyun ; Yi, Hyojeong ; Ulrich, Ricky L. ; Yu, Yan ; Nierman, William C. ; Kim, Heenam. / The early stage of bacterial genome-reductive evolution in the host. In: PLoS Pathogens. 2010 ; Vol. 6, No. 5. pp. 1-10.
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