TY - JOUR
T1 - The first complete plastome sequence from family Flagellariaceae (Flagellaria indica L., Poales)
AU - Jo, Sangjin
AU - Cho, Seonghyun
AU - Kim, Wonhee
AU - Kim, Ki Joong
N1 - Funding Information:
This research was supported by the National Institute of Biological Resources (NIBR) under the International Cooperation Project for Biological Resources II-1 [Grant no. NIBR202106101].
Publisher Copyright:
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
PY - 2021
Y1 - 2021
N2 - As a part of phylogenomic study of graminids, we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae. This plastome shows typical quadripartite structure. The plastome size is 161,643 bp, which consists of 88,714 bp large single copy (LSC), 19,065 bp small single-copy (SSC), and 26,932 bp inverted repeat (IR) regions. However, we detected F. indica plastome has a 288 bp small inversion between ycf3 and trnS-GGA. The palindromic repeats of 10 bp (TTCCAATTTC/GAAATTGGAA) were located on the two break points of inversion. F. indica plastome contains 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Unlike other families of graminids, the functional ycf1 and ycf2 genes exist. Sixteen genes contain one intron and two genes (clpP and ycf3) have two introns. Sixty-two simple sequence repeat (SSR) loci are scattered in the plastome, respectively. The phylogenetic tree shows that Flagellariaceae are the basal sister lineage of other graminid families.
AB - As a part of phylogenomic study of graminids, we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae. This plastome shows typical quadripartite structure. The plastome size is 161,643 bp, which consists of 88,714 bp large single copy (LSC), 19,065 bp small single-copy (SSC), and 26,932 bp inverted repeat (IR) regions. However, we detected F. indica plastome has a 288 bp small inversion between ycf3 and trnS-GGA. The palindromic repeats of 10 bp (TTCCAATTTC/GAAATTGGAA) were located on the two break points of inversion. F. indica plastome contains 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Unlike other families of graminids, the functional ycf1 and ycf2 genes exist. Sixteen genes contain one intron and two genes (clpP and ycf3) have two introns. Sixty-two simple sequence repeat (SSR) loci are scattered in the plastome, respectively. The phylogenetic tree shows that Flagellariaceae are the basal sister lineage of other graminid families.
KW - Flagellaria indica
KW - Flagellariaceae
KW - Graminid clade
KW - Plastome
KW - small inversion
UR - http://www.scopus.com/inward/record.url?scp=85116537375&partnerID=8YFLogxK
U2 - 10.1080/23802359.2021.1987176
DO - 10.1080/23802359.2021.1987176
M3 - Article
AN - SCOPUS:85116537375
VL - 6
SP - 3164
EP - 3165
JO - Mitochondrial DNA Part B: Resources
JF - Mitochondrial DNA Part B: Resources
SN - 2380-2359
IS - 11
ER -