Ultrasensitive FRET-based DNA sensor using PNA/DNA hybridization

Lan Hee Yang, Dong June Ahn, Eunhae Koo

Research output: Contribution to journalArticle

5 Citations (Scopus)

Abstract

In the diagnosis of genetic diseases, rapid and highly sensitive DNA detection is crucial. Therefore, many strategies for detecting target DNA have been developed, including electrical, optical, and mechanical methods. Herein, a highly sensitive FRET based sensor was developed by using PNA (Peptide Nucleic Acid) probe and QD, in which red color QDs are hybridized with capture probes, reporter probes and target DNAs by EDC-NHS coupling. The hybridized probe with target DNA gives off fluorescent signal due to the energy transfer from QD to Cy5 dye in the reporter probe. Compared to the conventional DNA sensor using DNA probes, the DNA sensor using PNA probes shows higher FRET factor and efficiency due to the higher reactivity between PNA and target DNA. In addition, to elicit the effect of the distance between the donor and the acceptor, we have investigated two types of the reporter probes having Cy5 dyes attached at the different positions of the reporter probes. Results show that the shorter the distance between QDs and Cy5s, the stronger the signal intensity. Furthermore, based on the fluorescence microscopy images using microcapillary chips, the FRET signal is enhanced to be up to 276% times stronger than the signal obtained using the cuvette by the fluorescence spectrometer. These results suggest that the PNA probe system conjugated with QDs can be used as ultrasensitive DNA nanosensors.

Original languageEnglish
Pages (from-to)625-630
Number of pages6
JournalMaterials Science and Engineering C
Volume69
DOIs
Publication statusPublished - 2016 Dec 1

Fingerprint

Peptide Nucleic Acids
nucleic acids
peptides
DNA
deoxyribonucleic acid
probes
sensors
Sensors
Nucleic Acid Probes
Coloring Agents
Nanosensors
Dyes
dyes
Fluorescence microscopy
DNA Probes
fluorescence
Energy transfer
Spectrometers
Fluorescence
Color

Keywords

  • DNA sensor
  • Fret
  • Microcapillary
  • PNA
  • QD

ASJC Scopus subject areas

  • Materials Science(all)
  • Condensed Matter Physics
  • Mechanical Engineering
  • Mechanics of Materials

Cite this

Ultrasensitive FRET-based DNA sensor using PNA/DNA hybridization. / Yang, Lan Hee; Ahn, Dong June; Koo, Eunhae.

In: Materials Science and Engineering C, Vol. 69, 01.12.2016, p. 625-630.

Research output: Contribution to journalArticle

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