Validation of deep learning natural language processing algorithm for keyword extraction from pathology reports in electronic health records

Yoojoong Kim, Jeong Hyeon Lee, Sunho Choi, Jeong Moon Lee, Jong Ho Kim, Junhee Seok, Hyung Joon Joo

Research output: Contribution to journalArticlepeer-review

2 Citations (Scopus)

Abstract

Pathology reports contain the essential data for both clinical and research purposes. However, the extraction of meaningful, qualitative data from the original document is difficult due to the narrative and complex nature of such reports. Keyword extraction for pathology reports is necessary to summarize the informative text and reduce intensive time consumption. In this study, we employed a deep learning model for the natural language process to extract keywords from pathology reports and presented the supervised keyword extraction algorithm. We considered three types of pathological keywords, namely specimen, procedure, and pathology types. We compared the performance of the present algorithm with the conventional keyword extraction methods on the 3115 pathology reports that were manually labeled by professional pathologists. Additionally, we applied the present algorithm to 36,014 unlabeled pathology reports and analysed the extracted keywords with biomedical vocabulary sets. The results demonstrated the suitability of our model for practical application in extracting important data from pathology reports.

Original languageEnglish
Article number20265
JournalScientific reports
Volume10
Issue number1
DOIs
Publication statusPublished - 2020 Dec

ASJC Scopus subject areas

  • General

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